fank1 (fank1,LOC108436747)


Basic Information

Item Value
gene id fank1
gene name fank1,LOC108436747
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19353863 ~ 19364239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933819.2
TCACCAGCTCTCAGTGTAAATGAATGGTTTCTTTGTCACTGCAAGTCGCTGTATGTGTGAATAATTGTAATAtctttgaaaaagaaaagaaaagaaaaaaaaaacaaaacaaaatactgGAACCTTGACCCCTCGAGAAATGAACCATTTTAACCCAGTTGGAAATCGACTGGCACCGGAAACCAACCCGGAAGCGCGCGCACTAGCGCTCGTGCACGTAGCAGTAATGGCTAATGTAGTTACAGTTTGCTCCACGTAGTGCGCTGTTACGCTGCGTGAAGAGTGTGAAGCTCTTAAATAAATGCTGGTTAGCAACTGTAAAACCCGAATAATCGAACAAAAATCTACTTTATTAAAGCTAACCTAGAGAACGATATGTAATTTGTCTAAAATGgtgatctggaaaaaaaagctcagtAAGTAAACACTCACGCGCTGAGAACCAGACTCACGCGCTGTTCCCATAGCAACTGTACACTCAACAACCAGCAGCTCTGTGGGAGTAACTGCACGGTTGTAGGTAACATCTGTACGCTAAAGTTTACCAGCTGTTGACTCAGTTTAACCAGCTGTTACTGAGGAAAACATCTGCTTTCATAACGCATCAACACTGTAAAGAATCATCGATGAACCCAGCTTCAGTCAGTGGAGACTGCGTGTCTCCTGAAGTACTCGTGGTTGAGAAGGTCAGTCATCACAGTATTGAGCTAAGCTGGAGAACGGCGCAGGATGACCGCAGCGGCCCTACTGAAAAGTGGACTCGCTTTGCTGTGGAACAGATGgatcccaaaacacacacatatgacaccatatatatAGGATACAGCACTCATCATATTGTGGAGGAATTAGAGCCGTGTACATCGTATCGGTTCAGACTGAGGATCAGCAGAGCAAACGGGGAGTTCTGTCTCACCCCGCCTGTCTCAGCCTCCACCTCTAGGGAGCCGCTGAATGGCAAACATCTGCACCAAGCTGTAAACCGGAATGATGAAGAGGAGCTGAGTAGAGTGTTGCAGTCTGGGATGGTGAACGTGAATGTTTGTGACAAGCTGGGACTCACACCACTCATGGTGGCTGCACAGAAAGGTTTTAGCAGGATGGTCTATAAACTGGTAGAACACGGTGCTGATATTCACATGAAGAATGGCAGTGGTAAAGACTCTCTGATGCTGGCCTGTTTTGCTGGGCATTTGGATATTGTGAAGCACCTGCGCAACTTTGGGGCTACATGGCAGTCTCGGGACATGGGCGGCTGCACTCCTCTCCACTGGGCTGCAGACGGGGGCCATCTTCCTGTCCTAGCCTACATGATTCAGGATGGCTGTGAGCTGGATGTGCGGGACACCGTGTCTCAGTGGACTCCTCTCATGAGAGTGGCAGCAGTGAGCGGAAACTCCGCCGTGGCCTCACTTCTTATCCGGGCCGGAGCTGACGTCAACGTCCGAGACAAGGACGGGAAGACGCCACTTATGGTAGCTGTGCTAAACAATCATGAGCAGCTGGTGAAGCTCCTGCTGGATAGCGGCGCTGACCGGCATGTGAAAAATGAGTTTGGATCAGGTGCAGCAGAAATGGCCAAAGCCTTTGGAAAGCAGAACATCATCAACTTGTTGGAGGGAAGGAAGATTCTCTAGATTTGGCATCAAAAAGAGAACAGTATAAAACTAGAGATGTCACGATGCCACTtttttcctgattctgattctgaatacCTTGAGTGTCAGCTGATACTGATACTCATCCAGTATTGTTTTCATTAACTACTAAgctataaaattatttttcaactgaagcacttaaaaaatacaggaaaaatacatagctaaaaaaaaaaaaaaaaa

Function

symbol description
fank1 Predicted to be involved in positive regulation of DNA-binding transcription factor activity and regulation of apoptotic process. Located in nucleus. Orthologous to human FANK1 (fibronectin type III and ankyrin repeat domains 1).

NR:

description
PREDICTED: fibronectin type 3 and ankyrin repeat domains protein 1 isoform X2

GO: NA

KEGG:

id description
K24483 FANK1; fibronectin type 3 and ankyrin repeat domains protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933819.2 True 1844 mRNA 0.46 11 19353863 19364239

Neighbor

gene id symbol gene type direction distance location
abraxas2 fam175b coding downstream 340909 19001132 ~ 19012954 (-)
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 420068 18931562 ~ 18933795 (-)
LOC113538579 LOC108270446 coding downstream 422506 18918532 ~ 18931357 (-)
pomt2 pomt2,LOC107594797 coding downstream 436636 18902222 ~ 18917227 (-)
lin52 lin52,LOC107594798 coding downstream 452991 18888165 ~ 18900872 (-)
klf11b LOC108270275 coding upstream 24732 19388971 ~ 19392182 (-)
grhl1 grhl1,LOC108269933 coding upstream 43478 19407717 ~ 19421925 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 134509 19498748 ~ 19524868 (-)
LOC113538672 LOC108269607 coding upstream 164428 19528667 ~ 19583250 (-)
LOC113538986 LOC108269623,LOC108430634 coding upstream 264995 19629234 ~ 19643615 (-)
LOC113538783 NA non-coding downstream 68022 19280278 ~ 19285841 (-)
G167883 NA non-coding downstream 551170 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 756977 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 781970 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 789484 18563971 ~ 18564379 (-)
LOC113538592 NA non-coding upstream 76850 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 129824 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 222103 19586342 ~ 19586548 (-)
G168405 NA non-coding upstream 234129 19598368 ~ 19598898 (-)
LOC117598328 NA non-coding upstream 315258 19679497 ~ 19680669 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 387250 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 506167 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 710974 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 971408 18375403 ~ 18382455 (-)
G167566 apob other downstream 1037656 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 222685 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 225129 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 235891 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 649340 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 934272 20298511 ~ 20301554 (-)

Expression


Co-expression Network