jmjd1ca (LOC108270245)


Basic Information

Item Value
gene id jmjd1ca
gene name LOC108270245
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15917801 ~ 15981784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933853.2
agagagagagagagagagccataATGACTGTTACTACTCTCAGTGTAAATCAGTTTCAcggcgcgcgcgcacacaccgCTCTGTAGCCGGAGACGGTGAGCAGGGAATTTAAACCGGTCACCCGGTATTCTGTCACAGTGACAATTCCAGCCCCGTTATTTCCTTAGTcggcttgtttttatttgttttgaaatatgATTATACGGTAGTCGGAGCGCTTCCTGGAAGTTAGTTTTCCGCGGATATAGTGTTTGCGGCACTTTTCTTCGGCGGGGACATGGAGCTGGTGGGTCGGCGCTTCCTGTGCGTGAGCGGCGGAGAGGAGCGCGAGCTGGGCGGCGTGGCGCGCTGGGGCTGGAGAGCCGGACTCATCCGCGCTGTCACAAGCCGCCACACTGACAGCCCCACTCTAGCTgtgtgtgtggagtgggACGGCGAACCGTCAGCAGAGTGTAAATGGAGGAGGCTCAGGGAGGAGTGGGAGGTGTTTGTCCTGGAGCATGAGTTGGTATGGGCCAAGAGGAACAGCACCTCACAGGAGAACAGCTCTCCACAGCCTGCACTGgtATTCCAGCCCCTGATTGGCCAAGCGCATGTGGGCGGAGTGGCAGTGGTGGAGTTCCTGTCAGACAGAGAGCTGGAGTTCTACACAGAAAGAGAAGAGCTTCGTCCGTATGAggAGGAAGTGGATGGCGGGAGCTCACTGCTGAGAGAAGATCTTTCAAGCCATGAGCAGCTCCAGGCTTGGCTCAGACATCGTCAGCTCCAGCACATTCTTCAGCTAGGACACAGCAGTGTGAAGGGCCTCAGGGTGAAGGTGTTCAGACCCGATTCCAAACCTCAATGGCTCCATGGTATCGTAAGCCATCATGATCACAACAACAGAACCATGACTGTcctgagcgaccagGTAGCAGAGCCTCTGAGTGTGGACCCAGCACTTGTGCATGTGCTGGTTCTGGACGACATAAGCCAGTTGTTATTAGTGGAACAAAATGCCACAACAAATTGTAAACCTCACACTAACAAGATCAGCAGGATCACCCTGAATACAGGAAACAAGTCAAGAAACACTACAGAAGCAGATCCGGTGTGTAGCTCGGGGCCAGTGCAGAGGAAACAGCCAGAGCTGTGCAGAGAGAAATCCAACTGCAGCCCAAAAGAGGACGACACAGACAGGATGAGAGAGGAGAGCGGAGCTGATGAAGCAAGAGCAGATTCCTCAAAAAGTATGATCAACCATagtgagaggaagaggaggaaagcAGGGGACAAGGAAGAGCAGGATGAAATGGACAGTAGGAGTGCTGGGTTGAAGAGGTCGAAGGGTAACAGTGgctctgaccagtcagaatacAGTGATTCAGAGGGCAGCATCTTGGAATCAAAAAGCCTACAGAGAAAATCTTCAAAGAAGCCAGCTGACTGCAAGACAGTCAACAATCCTGCAGCACATTTAGGTCATGACCTGAAGGCTCACTCGTCCCCCAAAAGCATAGAACTTTCTTCTAGCCAATCAGCAGAGACTGAATGCCAGAGAGTAGGGAAAGTCATGCCCTTGCAGGGTAATTTAACCAACACACCCTGCAATGGAGTGTACCAAACAGTCAATTCATTACAGTGCACCATGGGACTGGGCTGTGATAAAGCAGAGATGGAACGgggagatggagtgatggaggaCCAGAGTGAGGGTGCATCACAAGAGGACTGTGAAGCTGTCTCTGCTCTACTGGCGTCCCAAGAGGATGAGCAGCTGGTTTCCTTGGAGACTGCATGTGTGTTATTGCACACATCGCCACCAGAGTGCGAGGGGGTTGAGGGTGAACAGGAGATTCCACAAGGTGAACCAGAGGTCAGGACATCTGATTTGACGTGCCCAGAGGTCATTACACCCAGTTGCGACCCAGCAGAAGCAGTGGAAGAAGAGCCCAGAGTAGTTTTGACTCACTCTCCCACCATGATTTGCAACTCAAAGGTGGATGCTGTTAAAGTAGTTAAGTCAAGTCAGGCTCCTGGTCTAGCTACTAGTCCTAGACACGATGCTGCTCATGTCTCAGAAATTACCCACAAGACCACTGTACACCAAAGTCCTTGCTCCTCTCTTGAGGTGATTTCCAGGCCACCAGATGTTACAGAGGTTACCAGGCTGAGATGCAGTGCCTCTCCTCAAGCTGCCAGAATCGAAGAGAGCAGTTTGCCCTCAAAAGTCAGTACAGATAAAGTTCTCATTGGATTTAAAAGCACACAAGGTTCCAAAGTTACCCCTACCCTGACCCTTCATCAACATAATGCTCCCTCTCCTAGCACAACAGACATACAGGCTCAATCAAGGACCCCCCCTCAGACTATTGCCCATAATCACATGCCTACTGCAGACAAACTAACTAAGAGCCCACTGATCATTGACAGAAATGAGCCTTTCACGGTCTATCGAGACCCAGCACTTGTGAGGAGAGAACTGGAGAGCCTCTCTACTTATGTCCAACCACCACACACCCCACCCAACCTTCATTCGAAACACCATCTGAAAAGCCCATCTCCCTCCTCCAGCTCCCCCAGCCTTACCTCCACCACCTCCCACACCAAGATCATGAGTCCTGCAGCACACCTCTCACCTCTTCCGCTCCCTTCCCAGTCTCCTTTGTGCTCTACTCACCCCTCCATCCCTCACCCTCACCTGCTTCCATCTCTCCTGCCCGGTTTGCCCCCAACGTCAGCACTCCTGGCTGGACATGCTCGGCTGGCGCCTCTGAGTCTCCCCCACCACCCATTGGCCCTGCAGGCAACCCCATCTCTGCTGGGCCAGGGCCCAGGAACTGCTTCCCTGGCACCGATGGGCCTGTACCCAGTCCTCTGGCCCCCTTTTCCTAATGGGGTGCATGGCTATGGTCTGGGAATGCCAGGGCCCAAGTGGACACCCCCAGACACTGCAGGCATATCTGAGGTTAGCCTGAGGAGGAACACACCAAGCCCCTGGGTCCCTCAGACCTCTCCTGTAACCAGTGCAGAAAGTCAGGGTTTGCAACCCCCGCTGCCTGTACAGCCCTCAAGCGCTGAACCCCAGAGACCATCCAGGAGTGCCCAGCCCAGCACCCCTACCTCTAAAAGCACAGAGGAACCAGAGAGGAGGGTGTTCTCAGAGACTCAAAACTCCACTCACATGCCACTGAAGGCAGAACAGGAGCGTGTGAAGGCAGTAGTGGGAAAGAATGGACATGCATCCCACTCCACAGTCACAGAGTCACCTTCTGCTCGCTCCAAACAGCCTCAGTTGGTGTATGACCTCACAGGCGACCGCACCAGCTGTTACCAGGAGGAGAGTCGGCGCATTCTGCAGGAGAGCATTGAAGTAGCACCATTCACAGCCAAACTCAGCTCAGACAGAGAGCCCTATCCTAAAAGCCCCACTCCTTCACTACatttcaaagagagagagagagagcgacagtgTGACAGAGAGATGCACATGTTCAGACACAGCGTGCCTCCCAGGTTGCAGTCAGCCCAGCCTTCACCAACACTCACCCAGAGTAGCTACTACACCCCAGCAGCTGGCAGTGTGGAGAACAAGGCTTCTACACGTAGAGCTCCACCCAGCAAAGAGCTGTATGAGAGACTCAGTTCCCCAAACACTGCTGCCTCTGTCCTCTCTTCACCTAGCACACAGAGCACAGTCAAAGCTAGACCTCCACCCCTCGTCAAGCGCAACCCTGAGAAAGAGGAAGGTCTCCTGGGCAAGATTACAGACCAGTTGATCTCCAAAACTATCTCACTGGATCCACTAGAAGTCAATAGCATGGAGAGAAAAGGCTCCTCCACTTctctcatttctgtctcttcttcttcttcttctcgcGTTGTACCCTCACTGCACAGGGCCCCCATCTTCCACCCCCCAGCCTTACCCATTGTGACGTCTAAAGAGGCAGGGCAAGGTAGGTTGTCGCCACCCACCCTGACACCCATCCAGCCAATGAGCTTATCTGGAAAGGGTCAGAATCAGCACAGGCCGCCCACATTGATGCCTGAGCTCAGACACGGAGCAGTCACTGGAAAGAGGGCGGCTCCTGAGCCAGTATCCATCACAAACAAAGGTTATGATTTGCAGAGGAGTGGAGTTTTGCACAATCGAGAAAGAGTGATAGGAGGTCACATAACCAACGGAGGATTGGTGAACACACAGGCTGCCACTGCTTCTGTTATTGTTCGTTCTTCTGGCTACATGCACACACCTGTGAACCACACCATCACTGAAAGGTCACTTTCCCAAGTTCATTGTGACCATGTGCGAACATTTGAAAGTTTGCCAAGCACACACTCGAAGGATGGCAATGGTCAGTGTAAGAGGGGCATCCTGTGGACCCCGGTGGACACTGTGCACCCTGTAAACATGGTCACTTTAAAACAGGACATTAACACACCTTTGAACATGACTAAAAATATGagtactcattttttttttttttcaaatcgaGGGGtgaaatattctgtaaatataGATACACCACACTCAATAATAGACTTGGTATCTGAGCAGTGTgaaaaggagaaggaggaaatTAGTACCATAGTTCAGCCAAAGGTGAATCTCTCCTTTTGCCCCCCTAGAGACATCCCCCATGTAAAGAAACGCAGAGCTGGACTAGCTGCTTCAGAACTGAGGCAGAATATGCATGCAGTCCAGCCCCTGAACACTACGGACACTTTGAACACTACCAAGAGTAGATACACTTGCACTACCCACAGTACACATACCAAATGCACTGCGCACACTGTGGACCAAGATAAAGAGTCTATATTCAATCCTAGCCCATCCAAATATCCCAGGTTAGCCCCTGAGGTCACTGGGGTTGTAGCCAGCAAACCAGGCTCAGTGGGAAAAGTTCAGCCACTGTCTCCCTCAACCCATACTAACCATTCTGCCCAGTCTGGTCAAAACAATTACCACAAACTGAAAAAAGCCTGGCTTACCCGTCACTCTGAGCAGGACAGAGGTAGTGTCACCTCAGAGACAGCAGGGGGCAGTACCACACTAACCACCACAACCACTTTCTCTCTGCCAATCAAGCAGGAGGTGAATGGACTGGAGGATAAATGGCCCATACAGGAGGGCAAAGAACTTTTTCTAGATAATAGGAAATCTAAAACCCTAGACAGGAAATGCCTAGTTGAAGACAGGAAGCCCAATGGAAGCAATGCTAAGTCCAACACAGAGGATAAAAAAACACCTCTCACCAGGGATAATAAAGTTACTTTAGAAGAAGTAAAGCCCATCATGGATAGAAATGGCAACTTGCAGGGTAAGGAGCCTAACTTTCAGAATAAGAAACTATGCATTAATATAAGGAGGCCAAACTCAGCCGAcataaaaatagagaaagatAATCATGGGGAGAAACGGATCTTTCAGTCCAGCTTTGAAAGTGAGAGTGGAGGGGACTCGGTCAATGAAAACAAGTGTCACAAATCTGACCCAGGGAGCATACATCGGCCCAAACCTGCATTCAAAAAGAAGCAGAATGACCAGAAAAAGCAGAGaggtgagaatgagagagaggatgaagaggaagagggagaagaGGATGAGGGAAAATTTAATGGCACAATCCAGACTACCAAAGAGAAATCTCACCACAGGCTGCCTAGCAACGGCATTCCTCGTTCAGTGCTGAAGGACTGGAGGAAGGTAAGGAAGCTGAAGCAGAGCGGCGAGGCCTTCTTGCAGGATGATTCATGTGCAGAGATTGGAGCTAATGTACAGAAATGCCGGGAGTGCCGATTGGACCGCTCACGCAAGGCCCAAGAGCCTGTCATTTCACCTGTCTTTTGTCGCTTCTACTACTTCCGCAGACTGTCATACAGCAAGAACGGAGTAGTGCGGGTGGACGGCTTCTCTGTTGTGGAAGACACTGATGAAGAAGCAGTGCGGGTGTGGGTGGCGGGCTTTGAAGATGAACAAGAAGACAAGCAAAGGGAGATGGAGCTGGACACAGCCAAATACATTCTCACACTCATAGGAGACAAGTTTTGCCAGCTTGTCAAGACAGAAAACACTGCTGTCACATGGGTCAAGAAAGACAcccaGGTGATGTGGAAGCGAGCGGTGAGAGgtgtgagagagatgtgtgaCGCATGTGAAGCCACTCTGTTTAATATGCATTGGGCCTGTCACAAATGTGGCTTTGTGGTGTGCATGGACTGCTACAAAGCCCGCGAGAGGAAGAGTGCCAAAGATAAAGAGCTGTATGCCTGGGTTAGGTGTGTGAAGAATCAGCCCCATGACCTGAAGAGCCTAATGCCTACTCAAATAGTCCCAGAGAGAGTGTTAGCAGATCTGCAGAGCGCCATGCACTCTATAAGGAGAGAATACGGCATCCCCTCTCAGTGCTCTTGCTTTGGCAGCAGTGCCTTCCTCTCCAGATCCACCATCACTAATGGCGTCTTACAGCTTTCTGAGAGGCCACAGTGCAACTTGAAAAGCCAGCAGCAAAatcagcagaagaccacacagAACACTGCTCACAAGATCTCCACAGAGAGAAGAGGAAAATTGGAGTGTGATGATATTGAGACTTTGGGCAGGAAGTCAGGCAGCCCAGAGCAGGGCTCCACTTTGCGTGACCTCCTGACATCCACAGCTGGAAAACTGCGTCTGGGATCCACTGGGCCTGGAATAGCCTTTGCACCAGTTTATAACACTGATCAGACTGCTCAGAAAGCTCGCATGCCCAGCCTCCTGGATGACATTATTGCCTCAGTAGTGGAGAACAAAATTCCCGCCTCAAAGATGACCAAACTTCGGTTGAACCAGAATTTGCtgacagaggaggaggaagagctgGTGCTGGAGGAGGTGAAGCCTATTCGAATCCCACTGGCTGACCCGCATACCAGTGTTCCACATGATTGGATAGGCAGCCACCGGTTGCTTTGGCTTAAAGATCACCATCACCTAGGCAACCAAAGATTGTTCAAAGAGAACTGGACACAAGAGCAGCCGGTGCTGGTCTCTGGCATGCACAAGCGTCTGAATGCCAGTCTGTGGAAGCCAGAGCACTTTAGCAGAGAATTCTCAGCACTCCACAGTGATTTCTACAACTGCCGTGATGGGAGCATCATAAACACCTGTGTCAAGGAATTCTGGGATGGATTTGAGGATGTGTCAAAGAGAACTAAATCTACTAAAGGTGACCCTGCAGTATACAGACTGAAGGACTGGCCATCAGGGGAAGAGTTCCTGGCACTCATGCCATCCAGGTATGAAGACATTATGAGGTCATTGCCAGTTCCAGAATACACTGGTCCAGATGGAGCCCTCAACCTGGCCTCTCGCCTTCCGTCGTTCTTCATCCGGCCAGATCTGGGTCCTCGTCTCTGCTGTGCTCATGGTGTGACAGCATGCCCAGAGCAGGACTTTGGAACCAGCAATCTGCATGTTGAAATATCTGACACTATGAGTATTCTGGTCTACGTGGGTGTAGCCAAGGGCAATGGAGCTCTCTCCAAGTCAGGAGTTTTGAAACTCTTAGAGAGAGAGGATCTGGATGAGAGTGCAAAGAAGAGGCTGAGAGATCCCAATGAAACTCCAGGCGCACTGTGGCACATCTACCTGAGTAAAGATCTCCATAAGATCCAGGAATTCCTCCAAACGgtagcAGTGGAGCGTGCTGAGGCAGATGCTGAGGCTGACTCTGAGGCAGAATGGGAGAGTGAGGCAGACCCTCTTCGTGAGGGGAGCTGGTACCTGAGCCCGAAGCTGCGGCAGAGGCTGCTGGAGGAACACGGTGTGGAGAGTCGCACACTGCTGCAGTTCTACGGCGACACTGTGATTATCCCTGCCGGAGCCCTACACCAGGTGATGAATTTGCACAGTTGCATTCAGGTGAATGTGGACTTTGTGTCCCCTGAACATGCCCACAACTCGTATTACCTGACCCAGGAGCTCCGCCCTCTCAAAGACCAAGTTAATTATGAGGACAAATTACAGGTAAAGAACATCTTCTACCATTCTGTGAAGGACGCTGTGGCCGCTCTGAGCCGGCACTTGAAAGAACAGAGCACAGAGGAGGTCAAGGAGGAAGAATGCTGACGGCATTCATGCTCACTCTGTGAGCATGGCACAAGGTGCAGACAATCTCCAGATCCTTCAGAGAGGAACCACTGCTCTGCGAACCAATTCCGAAGTCGCACATTTCACACCAATGACCATAAATACTATTTTGCTTCCGTGCAAGGACCCATCACTTTCTCCATGATGTCACCATATTCTGTTTGATTATTGTCGCTATATCTTCTCCAGAGCTCagccccaccctgatatcttccTGCTTGGCCAGGAAGTGAGGTGAGAGGCTGAGGCATGTCTGAACAGTGGAATAGACGAAGTGGAACTCTCTCTCCTGAGCAGGCAGCTGCAAAGTTGCTGAGCAGGAAGAGAGGTGAACTGCTAAGCACAGCACTTTCGAGCTCTCACATGCTGTAGGCTGTGGATAACCAATGCAAAAGAACAACCACAAAGgcatttttcttcaaaagaTGATGCTCTGAGGCATATTCTTAATCAGTAGTTATTGTGCTGCTAACTGTTAGCTACACTTGTCTGCTGAGGTTCAGACAGTTGGGAGAGCAGCTAGGCCAACACAACCATAGCAGCATTCCTTTACGTCAGCCAGCGCCAAGCTGTtagcttttattgtttttgttcaaaggtgatattaaattattaacagtTTGGCTGGTATTCACTGTGCAGAAGGAGAATATAAAGGAATTTGCAGTATatgatgtgtttgtttaaaaaaaaggttcttgtGAAATTTTGAGCTGAAATATGTAAATAGcagaatatacatatataatatattaattatgatttttctataacatgGTGTGCTTTATTTGCTGTATGTGTTGTTTGCTACTGTATGTACATTGAAGCTAAAGAGatgttttacattttccattaaaaatggAATCAATCAAGAACA

Function

NR:

description
PREDICTED: probable JmjC domain-containing histone demethylation protein 2C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933853.2 True 8990 mRNA 0.50 28 15917801 15981784

Neighbor

gene id symbol gene type direction distance location
egr2a egr2a,LOC108269483 coding downstream 3091 15906357 ~ 15914710 (-)
rtkn2a LOC108269925 coding downstream 28263 15883398 ~ 15889538 (-)
zfyve28 zfyve28 coding downstream 39457 15864120 ~ 15878344 (-)
nt5c1ab LOC108269929,LOC108425685,LOC106610886 coding downstream 54173 15858730 ~ 15863628 (-)
si:dkey-21a6.5 NA coding downstream 62618 15848037 ~ 15855183 (-)
ahsa1b ahsa1,LOC108425677,LOC107732084 coding upstream 5302 15987086 ~ 15992896 (-)
si:dkey-229e3.2 LOC108269466 coding upstream 19278 16001062 ~ 16007423 (-)
eprs1 eprs,LOC107732550 coding upstream 28693 16010477 ~ 16035433 (-)
LOC113539022 NA coding upstream 34568 16016352 ~ 16016484 (-)
zgc:174356 LOC108269442,LOC107719194,LOC107662648,LOC106601284 coding upstream 137933 16119717 ~ 16136443 (-)
G166319 NA non-coding downstream 21231 15895667 ~ 15896570 (-)
G166289 NA non-coding downstream 71546 15664486 ~ 15846255 (-)
G166286 NA non-coding downstream 310279 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 426793 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 671892 15245584 ~ 15245909 (-)
G166390 NA non-coding upstream 18435 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 285445 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 463057 16444841 ~ 16446005 (-)
G166865 NA non-coding upstream 762822 16744606 ~ 16744822 (-)
LOC113538645 NA non-coding upstream 857297 16839081 ~ 16865427 (-)
eml5 eml5,LOC108435760 other downstream 155083 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 254306 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 595750 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 800437 15107120 ~ 15117364 (-)
nenf nenf other downstream 835596 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 891495 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1185084 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1633954 17615738 ~ 17624534 (-)
G167566 apob other upstream 2323959 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2393619 18375403 ~ 18382455 (-)

Expression


Co-expression Network