rpusd2 (rpusd2,LOC103399345)


Basic Information

Item Value
gene id rpusd2
gene name rpusd2,LOC103399345
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18551683 ~ 18556050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933879.2
tgtaataaataagcTTACGTTGTTAGTTTTTGTCTGAATAGATAAATTGCCGAAACTAAGTTATCGTGTAGCGCTGCTAGTTTACTTGTGATGTCATCAGTCTGCGACAGAACACGCGCACGGGCATGTCAGCACGGCATGTTGGAGCAGATGGTATATCTGTGTTAAAATGTCTACATAGACTGGTCAGTTGTTTACAATTACACAGTAGTTGTTTTAGAAAGAGACGTGTACCTGGTGACATTTCTTCACTGTGGGATGGAATTGATGTTAGCGGTACTATAACGCGATGTAAACAGCTCCGGCGAGATTTCCACACCGCAGTCAGTGTTTTCAGAGCAGAGTACTACAGAAATAAGTTCAGCATCATGGAGAGCAAAGAGTTAAACACTGCAGAAATGGGAAAGGAGCAAGAattgagtgtgagtgagagcaAAGAAGTGAAGGAAAGCTGCAAGAAAAGGAAAAGCGAAGACCCTGAAGAACATGAGAGAAACAGACGGGGTAAGAAGAGAAAGGGAAGCAAACAGATGAAAGCTGGGGATAGATATGTTCCTCCACCACAAAAACGCAATCCTGGAGTGAGTTTTAACCAAGAACACTTTGCAGAAACATCCTACTATTTTGAAGCAGGACTTAGAAAAGTGCACCCTTATTATTTCGATTTTAAGACTTACTGTAAGGGACGCTGGATTGGTAAAACCCTGTTAGAAGTTTTCAGCAGTGAATTTCGAGCAGAACCTCTAGACTACTATAAGAAAGCAGTCAAAGAGGGACGCATTCGACTGAATGAGATACCTGTGGACGACCTGAATATAACCCTGAAGAACAATGACTTCATGAGGAACACCGTGCATCGCCATGAGCCCCCTGTCATTGGGCAGCCACTGCAGGTCTTAGTGGATGATGGTGAAGTGGTGGTGGTAGACAAACCCGCCTCTCTGCCCGTACATCCGTGTGGCCGCTATCGCCACAACACCGTCATCTTCATTTTGGGGAAAGAGAGAGGTCTGTGCGGTCTTCACACCGTGCACCGTCTCGATCGCCTCACCTCAGGCATCCTGCTGTTTGCTCGCACTCTGGAGACGTCCAAGAAACTGGACCAGATGGTTCGGGATCGACAGTTGGAGAAGGAGTATGTTTGTCGTGTGGAGGGGGAGTTTCCTGACAACGAGGTTGTGTGTGAAGAACCAATTCTGGTAGTCTCATTCAAGGTGGGTGTCTGCAGGGTGGATCCCAAAGGCAAAGACTGTCGCACAGTTTTCCAGAAACTCGGTTATAATGGGCGCTCTAGCGTGGTGCGCTGCCTCCCACTCACTGGGCGCACGCACCAGATCCGCGTGCATCTCCAGTATTTAGGCTTCCCCATCCTCAATGACCCCATTTATGGCTCTTCTGCTTGGGGCCCGAACAGAGGCAAAGGAGGCCTGGTGGGTAAAAATGATCAGGAGCTGCTGGAAGCTCTTATTGAGGAGCACCGTTCCAAGGAGAGTTTGCACCTCTTGGATATCTCTGATGAAGTGTTATCTGGAAAGGGCGAGCCTAATGTGGGCACCAGTGGCGGTGCTCTGGTTGACAATGCACTGACAGTCATGACTGAATCTGTAAACACTGCATGTGAAGAATCAACTGCAAGTACTACTTCAAATGACAAGGAAGCAGAAACGAATACTATACAGGCAAAAGAGAGCAGTTATCACTCTGAGGAAATATCCAGAACTGCAAACACGATCAAGACAGTCAGAGATCATTTATGTTCGGAGTGTAAAATTGTCCGACCTGACCCTACAGAGAAGGAGCTAGTCATGTATCTGCATGCATTACGCTACAAGGGGCCTGACTTTGAGTATTCCACACAATTGCCTGATTGGGCTAAAGAAGACTGGGTGCAGgattgaaatcttttttttttttttaatgttatttcctgttctttatgaatatttaatctgtaaaaaaaGAGTGAATAGAATATGGTTGACCTTTGGATTTGCATCTGAAATTAGAACTTTGATCTATCCTTTATGTGaaaatttcagtaaaaacagctttaagtgaaaatgtaaaatttctGAAACCATTCAAAAagctgagtaaaaaaaatctttgaaaatAGAGACACCACTATATGAAGTTATTCAGACACTTGTATTCTCCATTTTCTGTGATCCAGGTCATGGCtcagtaaaatataaatcttta

Function

symbol description
rpusd2 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD2 (RNA pseudouridine synthase domain containing 2).

NR:

description
RNA pseudouridylate synthase domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933879.2 True 2202 mRNA 0.44 3 18551683 18556050

Neighbor

gene id symbol gene type direction distance location
pkdccb LOC108270133 coding downstream 25784 18519897 ~ 18525899 (-)
eml1 eml1 coding downstream 39076 18459472 ~ 18512607 (-)
evla LOC108425620,LOC108270303 coding downstream 114530 18415378 ~ 18437153 (-)
yy1a yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103 coding downstream 147714 18399711 ~ 18403969 (-)
c10h1orf115 NA coding downstream 261208 18287763 ~ 18290475 (-)
pcmtl pimt,pcmtl,LOC108425617,LOC105015970,LOC107392292,LOC107719513 coding upstream 68 18556118 ~ 18563366 (-)
ivd ivd,LOC107719458 coding upstream 103238 18659288 ~ 18666320 (-)
ltk ltk coding upstream 127755 18683805 ~ 18752787 (-)
rpap1 rpap1 coding upstream 222430 18778480 ~ 18799429 (-)
haus2 haus2 coding upstream 266226 18822276 ~ 18825221 (-)
G167684 NA non-coding downstream 92889 18458455 ~ 18458794 (-)
G167618 NA non-coding downstream 146908 18404553 ~ 18404775 (-)
G167617 NA non-coding downstream 152259 18399171 ~ 18399424 (-)
G167580 NA non-coding downstream 234984 18316478 ~ 18316699 (-)
G167579 NA non-coding downstream 248344 18302105 ~ 18303339 (-)
G167783 NA non-coding upstream 7921 18563971 ~ 18564379 (-)
G167786 NA non-coding upstream 15453 18571503 ~ 18571893 (-)
G167802 NA non-coding upstream 40531 18596581 ~ 18596886 (-)
G167883 NA non-coding upstream 246391 18802441 ~ 18802693 (-)
LOC113538783 NA non-coding upstream 724228 19280278 ~ 19285841 (-)
gdf7 LOC108270114 other downstream 169228 18375403 ~ 18382455 (-)
G167566 apob other downstream 235476 18305743 ~ 18316207 (-)
cmpk2 cmpk2 other downstream 927149 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1303860 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1652953 16873279 ~ 16898730 (-)
bahd1 bahd1,LOC108436768 other upstream 44245 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 283565 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 405658 18961708 ~ 18966613 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 1030874 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 1033318 19589368 ~ 19595214 (-)

Expression


Co-expression Network