ldah (ldah)


Basic Information

Item Value
gene id ldah
gene name ldah
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18330467 ~ 18374080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933899.2
GTTCAGAAAGCAGCAAATCGAAGGACCAGAAGAAGTAAAACACGGAAGCTTGTGTTCAATCGATTCATCATTTATTCTTGCTATGATATTTGTGGTGAGGAGGAGACTGGAAGCTCTTATGAAAACCAATTTTATAAACTTTCTTGGCATCCAAAACGACGCAAAACTCTTTGTCGacccACCGCCTGGCTGTGCTGGTAATGCAATGAGCAGCCTGAAGTCTGAATGCCAGAAAGAGGATGCAACTGTGGAGCATGTCTACTGCAGAGGTGCTGTCACTGAGCTGCTTAAATATGGGCCCAGAGACCTGCACACAGCTACCAAAAACTCTAACTCACCCCAAGTACTCATCCTCATTATCCCAGGCAACCCTGGCATAGTGGGATTTTATAAGACCTTCATGTGGACATTGTATCAGGCATTTAACCAACGATACCCAGTCTGGGCCGTGAGTCATGCTGGACACTGTGCACCTCCAGACACAATGGATATGGTTGAAGATGCTTCGGTGGCCGAGGCAGAGGATGTGTTTGGCTTGAATGGGCAGATTGAGCACAAACTGGGCTTCCTCTTAGAACATGTGCCCCGAGACACACAGCTCATCCTGATTGGTCACTCAATCGGCTGCTACATCATTCTGGATATGATGAAGAGAGACCCAGAGTTAAAGGTGGTGAAGTCCGTACTGCTGTTTCCCACTATTGAACGCATGGCCTCTAGTCCGCAGGGCAAGGTCATGACTCCTGTGCTGTGCCATCTGCGCTATGTTGTCTACTTGCCCATcttcctgctctctctcctaCCTGAGAGGCTGAAGGCTGGCATGGTGCAGCTGGTACTGAGGAACCTGCATTCACTAGACACATCCTGCATCTCAGCTACCCTCAGCTTGATCAATGTGGACTGTGCTGCTAATGCTATGTATATGGGGAGTCAAGAAATGAGGATGGTGCTAGATCGAGATAACTTGACCATACAACAACATCTTGACAAGCTTGTTTTTTACTATGGAGCCACAGACCACTGGTGCCCTGTGCAGTACTACCAGGATATCCGAAGAGACTTTCCCGATGGAGACATTCGTTTGTGTGAGCGTGGACTGCGCCATGCATTTGTCCTGGATGCGGGTGAAGAGATGGCTAACATGATCACACAGTGGATACGTGATGACCTAAGAGGATTATAGTACTACTAGTATCAAACCTGACCACTGACCTACACAGGCCCTGTGTTCCAGTGCCGTTCACAGTGACTTACGAGGAACAGATTATCAAAGACCTTTTAAAGGCCTTTATTATGGTGCTGAAACCCAATGCTTCTCAATGAACACTTGAAAATGCCCAGATCCTCAAATTTGCTTCTTAAaataagaatttttaaataagtggCTACTCTACCCTTAACAAATGAGTACTCTGTTTTTATTAAGACTACAAGCAATAACAGAGAATTTAGAAATGTGATTCCTTTACCACTCACTGCTTGGCTAATTAAGATTTATGATAAACTTTAGCGTCTTCCCAACACctagcctctgtttttttttattcagtgattGGATTTTGTCTTTAATAgttaagaaattaaatttacTGTGGCCACTATAATAGCAGGTTTTAACCTATGTTAAATCAGTAAGCACACATTTGAAGGTTTGAGACCAAAGTCTTCCTATATTGTGCAATCTGATTAAAAATCAGATgaaaagccagaaaaaaaatgatcattgCACCAAAGCATAGACATCATATACCCAAATCTggtgggtgtgttttttttttgtttgtttgtttgtttggaggGATTACCTGTAGTTTAATAGAAAggtaatttaatattaatggtTGGACTAGTGGTTTACCATTAAtctataataaattattgtaaaatatccAAGTATCCTTGTACAATATTTGTCATGGTATTCTGATTATAAATACTGTTGAGATATTCTGAAGGATGGCTATAAAACACCTGTCTAAAAAAGTGATGTGGAAAGTTTTTATAAAGTAATACTGACTATTACAGTGATTTATTCAACTATAAATATGTTGCACACATGTGTTTTCCATTTCCAATGAAAACGTAGATCATAAGAAGACCTTAAATGgggtttgatttgtttttggtCAAAAAATAGCATTTTGGCATGGTGgcaagaaagcagaaaaagtGCATACTGGCAGGAGTCAAATACTACAGGCCTTATGACAGCAAACTAGAGCTTTTGAGAACAGAGAGTAATGAATTTTCATGTGTTCCATGCACTTTTCAGTGCACTGGATTCCTATTCGGTGTATTTGCAGCATTCACCATATGGATAGTGCTTAACAGCATCAGGCCTGTCACTCTGCCTTGGTTATATTTTCCCACACAGCATACCAAGACTCTCAAATAGTGTTGTACCTGAAAAGCTGTTCTTCTCCTATACTGATAATCATGTGGACAAAACAGGGCTCTGTTTTAAGAAAAACATTATAGAAAGGCTTGGGTCCAGTTGCAGAGTTTTAACTGGTTGAACATGCAAGTCTCCCTCAATAACCCACATGTCCAGAACAGTAGGAAGTCCCACAAACCAGTCAGTCGTAACAAACATCACAAATCACATTGTTTTGCTTTGTCTTGGATACGACTATATTCCTGTCTACCACAATAGATAATGCCCTTTTGATTTCAACATTATCATCCCTGAACCAGATGCTGCTAATATCCAGCTTGGCTTTGTCATTTTGACACCAGATACACTGTAAGTATTAGTGATTTCATGATTCCTAATTAAACTTCACATTCAAGGATGTCCTATAGGCATCATACCAGTGAACAATATCTTGTGTTAGTGAAAAGCTGAACAAATGTAGAGTAAAACATCTCCAGCTGATCCGGTTTGTTGGATGTCCCAGAGGAAATGTAAACCCTCGACATGTAAACCCAGGCCTCTTTAATCTCCCTCTTCTGCCTGTTCAGAAAAGAATGACAAAGCCCCTTAATTTGCTTATCCTTGATTTAAACCAGGAGGCAGGGCTAGTTCATCGAAGGAAATGGAGTAATCCCGTCCGGGTGGATTGAATTGTGGCAAAGCAAACAAGCTTTactgttttacattttcaaagtgGTTTAGGCTTTTTGTGGCAAT
>XM_034308009.1
CGTTCAGAAAGCAGCAAATCGAAGGACCAGAAGAAGTAAAACACGGAAGCTTGTGTTCAATCGATTCATCATTTATTCTTGCTATGATATTTGTGGTGAGGAGGAGACTGGAAGCTCTTATGAAAACCAATTTTATAAACTTTCTTGGCATCCAAAACGACGCAAAACTCTTTGTCGacccACCGCCTGGCTGTGCTGGTAATGCAATGAGCAGCCTGAAGTCTGAATGCCAGAAAGAGGATGCAACTGTGGAGCATGTCTACTGCAGAGGTGCTGTCACTGAGCTGCTTAAATATGGGCCCAGAGACCTGCACACAGCTACCAAAAACTCTAACTCACCCCAAGTACTCATCCTCATTATCCCAGGCAACCCTGGCATAGTGGGATTTTATAAGACCTTCATGTGGACATTGTATCAGGCATTTAACCAACGATACCCAGTCTGGGCCGTGAGTCATGCTGGACACTGTGCACCTCCAGACACAATGGATATGGTTGAAGATGCTTCGGTGGCCGAGGCAGAGGATGTGTTTGGCTTGAATGGGCAGATTGAGCACAAACTGGGCTTCCTCTTAGAACATGTGCCCCGAGACACACAGCTCATCCTGATTGGTCACTCAATCGGCTGCTACATCATTCTGGATATGATGAAGAGAGACCCAGAGTTAAAGGTGGTGAAGTCCGTACTGCTGTTTCCCACTATTGAACGCATGGCCTCTAGTCCGCAGGGCAAGGTCATGACTCCTGTGCTGTGCCATCTGCGCTATGTTGTCTACTTGCCCATcttcctgctctctctcctaCCTGAGAGGCTGAAGGCTGGCATGGTGCAGCTGGTACTGAGGAACCTGCATTCACTAGACACATCCTGCATCTCAGCTACCCTCAGCTTGATCAATGTGGACTGTGCTGCTAATGCTATGTATATGGGGAGTCAAGAAATGAGGATGGTGCTAGATCGAGATAACTTGACCATACAACAACATCTTGACAAGAGGCCTCATGCATGCAGAGAGGTGGGACATGACTGGCTGAGATGTCAATGACTGGTGCACTTTATCTGTCATCAGTTAAAAAG
>XR_004578955.1
GTTCAGAAAGCAGCAAATCGAAGGACCAGAAGAAGTAAAACACGGAAGCTTGTGTTCAATCGATTCATCATTTATTCTTGCTATGATATTTGTGGTGAGGAGGAGACTGGAAGCTCTTATGAAAACCAATTTTATAAACTTTCTTGGCATCCAAAACGACGCAAAACTCTTTGTCGacccACCGCCTGGCTGTGCTGGTAATGCAATGAGCAGCCTGAAGTCTGAATGCCAGAAAGAGGATGCAACTGTGGAGCATGTCTACTGCAGAGGTGCTGTCACTGAGCTGCTTAAATATGGGCCCAGAGACCTGCACACAGCTACCAAAAACTCTAACTCACCCCAAGTACTCATCCTCATTATCCCAGGCAACCCTGGCATAGTGGGATTTTATAAGACCTTCATGTGGACATTGTATCAGGCATTTAACCAACGATACCCAGTCTGGGCCGTGAGTCATGCTGGACACTGTGCACCTCCAGACACAATGGATATGGTTGAAGATGCTTCGGTGGCCGAGGCAGAGGATGTGTTTGGCTTGAATGGGCAGATTGAGCACAAACTGGGCTTCCTCTTAGAACATGTGCCCCGAGACACACAGCTCATCCTGATTGGTCACTCAATCGGCTGCTACATCATTCTGGATATGATGAAGAGAGACCCAGAGTTAAAGGTGGTGAAGTCCGTACTGCTGTTTCCCACTATTGAACGCATGGCCTCTAGTCCGCAGGGCAAGGTCATGACTCCTGTGCTGTGCCATCTGCGCTATGTTGTCTACTTGCCCATcttcctgctctctctcctaCCTGAGAGGCTGAAGGCTGGCATGGTGCAGCTGGTACTGAGGAACCTGCATTCACTAGACACATCCTGCATCTCAGCTACCCTCAGCTTGATCAATGTGGACTGTGCTGCTAATGCTATGTATATGGGGAGTCAAGAAATGAGGATGGTGCTAGATCGAGATAACTTGACCATACAACAACATCTTGACAAGAGAGGTGGGACATGACTGGCTGAGATGTCAATGACTGGTGCACTTTATCTGTCATCAGTTAAAAAGCTTGTTTTTTACTATGGAGCCACAGACCAC

Function

symbol description
ldah Predicted to be involved in lipid storage. Predicted to be active in lipid droplet. Orthologous to human LDAH (lipid droplet associated hydrolase).

NR:

description
lipid droplet-associated hydrolase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933899.2 True 3133 mRNA 0.41 7 18330468 18374080
XM_034308009.1 False 1078 mRNA 0.48 7 18330467 18370028
XR_004578955.1 False 1090 misc_RNA 0.48 8 18330468 18371971

Neighbor

gene id symbol gene type direction distance location
LOC113539017 NA coding upstream 10391 18319970 ~ 18320076 (+)
apoba apob,LOC107697732 coding upstream 14085 18293819 ~ 18316382 (+)
nhsl1a LOC108270058,LOC108425629 coding upstream 143105 18132424 ~ 18187362 (+)
LOC117598336 NA coding upstream 404447 17925706 ~ 17926020 (+)
mboat2a mboat2,mboat2a,LOC108269814,LOC107553282,LOC107752759 coding upstream 463811 17800201 ~ 17866656 (+)
tpp1 tpp1 coding downstream 14025 18388105 ~ 18396271 (+)
degs2 degs2,LOC107697737,LOC107733197 coding downstream 34010 18408090 ~ 18414404 (+)
disp2 disp2 coding downstream 161254 18535334 ~ 18551703 (+)
ccdc32 c9h15orf57 coding downstream 189323 18563403 ~ 18568676 (+)
itpka itpka coding downstream 296362 18670442 ~ 18681876 (+)
G167546 NA non-coding upstream 42160 18286202 ~ 18288307 (+)
G167428 NA non-coding upstream 203100 18126435 ~ 18127367 (+)
G167395 NA non-coding upstream 240653 18089604 ~ 18089814 (+)
LOC113538631 NA non-coding upstream 242470 18072175 ~ 18087997 (+)
G167271 NA non-coding upstream 342051 17924713 ~ 17988416 (+)
G167557 NA non-coding downstream 1902 18375982 ~ 18376347 (+)
G167556 gdf7,LOC108270114,LOC108425593,LOC107594862,LOC107674098,LOC107733118,LOC107563371,LOC107719468 non-coding downstream 3354 18377434 ~ 18378760 (+)
G167636 NA non-coding downstream 84359 18458439 ~ 18458992 (+)
G167621 NA non-coding downstream 85418 18459498 ~ 18470004 (+)
G167665 NA non-coding downstream 139659 18513739 ~ 18513997 (+)
kidins220a LOC108269813,LOC108425633 other upstream 407716 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 623635 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 899716 17385507 ~ 17430751 (+)
G166976 NA other upstream 1273656 17055674 ~ 17056811 (+)
asxl2 asxl2,LOC102788176,LOC107600867 other upstream 1363126 16953173 ~ 16967341 (+)
prlh2r LOC108269650,LOC108425589 other downstream 195299 18569379 ~ 18578308 (+)
G168191 NA other downstream 1300833 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 1348700 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 1505655 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 1539263 19913343 ~ 19922486 (+)

Expression


Co-expression Network