slc30a1b (LOC108269644,LOC105895753)


Basic Information

Item Value
gene id slc30a1b
gene name LOC108269644,LOC105895753
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16940627 ~ 16953297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933915.2
CCATATTGGGTCCTTACTAAAGGAGTTGAGGAGTTGGAGCAGAAAGGATGGATTTGACTTGACATGTGCCAAATGTGATGAATTAAAGGGTATTAGAGATGGCTTTGGAACCGAAGCAAGCGAGGCTGCTGTGCATGCTGTGTCTAACTTTCGGCTTCTtcgtggtggaggtggtggtgagTCGAGTGACCGGCTCTCTGGCGATGCTGTCCGATTCCTTCCACATGCTGTCGGATGTGCTCGCGCTGCTCGTGGCGCTGCTCGCGGTGAGACTCGCGGATCAGACTGCGGCCACGAGCCTCAACACGTTCGGCTGGATCCGCGCAGAGGTCATGGGCGCGCTGGTCAATGCCGTGTTTCTCACCGCGCTCTGTTTCACCATCTTACTGGAGGCAGTGGAGCGCTACACGGAGCCGCATGAGATTGAGAACCCGTGGGTTGTGGTGTGGGTCGGAGTGGCCGGGCTCGCTGTAAATGTGCTGGGGCTTCTGATGTTTCATGGCTACTCTGGACACGGACACGGCCACTCtcacagcagcaggaggagtGAGAAACCACAGACATCATCAGGGGAGGCTTACGATCTGCTGGTGAAGAGCCAGTGTCCTGGCCGAGGTGACCGTGCTGTTCAGGTTGAAGCAGACGTTGTCTCAAAACATAGCCTGGAAATCCCATTGAATGGGAACATCTCACCGGAGAAGCTGGAGCATGATTTAGATTCATCTTCCCAGCTCAACATGCGTGGAGTCTTCCTGCATGTACTGGGCGATGCCCTTGGCTCTGTCATTGTAGTAGTTAATGCtctcattttcacatttgtgtGGAGGACATGTGACAGTCAGGAAATATGTATTAACCCATGCCTCAGTAGCTACTGCTCTGACCACTGGCTTGTGAATACACACTTGGTCCACAGCAATGGCACCAGTACTGTCTCTGTAGCTGGACCATGCTGGGTGCTCTACCTGGATCCCACACTCTGCGTAATCATGGTGGCCATCTTGCTCTATACTACCTTTCCTCTGCTGAAGGAGTCAACCCTCATCCTGCTGCAGTCCGTGCCTAAGCAGATTGACATGCAGAGGCTGGACAAAAAGCTAAGGAGTCTTGAGGGGGTTCTGGCAGTCCATGAGCTGCACATCTGGCAGCTGGCCGGGAGCCGAATTATTGCCACGGCACACATTAAGTGCCATGACCCAGCCTCCTACATGGACACAGCCAAACGCATCAAAAGCTTCTTCCATGAAGAAGGCATCCATGCTACCACAGTCCAGCCTGAGTTCTCGGATGACAAAGAGCCCGGTGTCTCAGAGTGTGAACTGCCCTGTTACAGTCAGTGTACCCTGAAGCTCTGCTGTGACACGAGCTGGAGATCTAGATCTGAATCAGCGCTCATGTGCACAGACGACTCGTCCAGTCAAAATACTCCTCAACACTCCAGTGCTAGCTGGAATATTCAGCAAAAGCCAGAAGTTTTTCTGCAGATGGAGGTGGAATCCACAGTCTAGGTTTGATGAAGTTATGAGTATGCAATTTTTTCAGCAATCTTCGAAACAGAATCATGTCTGTTTAAGACAGAGTTATGTTTCTGAGAATCTCAAATCCTTCTGTTTTATTACCCCCAACTGTATGTAAACCTATTTAACTAATCAACTACATGCAATACCTCTTATCTCTTATACCTGTGGTTTCTATAATTGTAATTTTGAGAATGTGGAGCATATGGAGCACTTTATGGTATTAATGTTTACTTCTTGCTCATAGTAAAATACTATCTATGTGccttatataaattaaaaaaacacaataattacCCTGTATATTATCATTGTATTATCATTTTATctttatcatttcatttattttagtgtaacaaatgttttaaaggaGGGCATAATTGTAATGTCTGTTCTTAGAACAAAGTAACAAATCCTCTCAATAGGAATGTGTTAACTTAGTGCCAAGATGCCAGCCCTTATAATCTGATTAACAGTTAACTACATCTGTGCCaaactaaatatttatatcacctGCTACTAGTGCTTACATGAAAGGTTTTGTTATTAAGGTCATGAATGTTGCATGTTTTAGGGAGTGTCAGACTCTGTAGGACATCTTATCCTCTGCACAGCTGTCAAAATACACCATGTCTCAGATATAACTCCATATATATCCAATGTGATTACTTGTTGAAATTGTTTAAAGGGCTCAAAAATGTCCAATCCACTTTAGGCTTTGAATGGGTGGTTAAGAAACCATAGTTTAGGGATAGAGTGGGAACACAACTTCATGAGGGCACCATGATGCAATAAATAATGCAGTGTATGGGGCACTGTGTCAAAAAAACAATAGAGAATAGCCCTTATTCAGTCCTTGCACAGTCCTCCAATCAATCCCCTAGGATAAGAGACCGACTGTGATGTCTGCTATTGTGTAcctttttaagaaagaaaaggatTGGCACTTACAGTAATCAGGGTTTTATTGTCTTGTTCTGTAAGATGGAATGGTAGTAGATAGATATCCATTGATATAAGTACTATGTGTGTGGGAAACATATATGTTTGTTATGTTTGACTCCTTTGTTAGAGATGATCATGTCAGAATAGTCCTGATTTCAGGCAAGAGAGATTCATTCTCCATATTACAACGGAATTACTGTAATCAATGgataaacaaaacagttttgtaATTTGCCACAATCATGTTCTATGCACATTAagcacacacattctttcaAAAGAGTTTAGTGCTTgtgtttctcattttaatttgttcattgATTTAGATCTGCTTTTAGATAAGTATTCAATCAATACTGTGTGTCATGTTTTACACTGATGTAATCAAGTATTTGCCACCTTTTTAATTATCAGTCAGAGTTTTGAAGTTTAAGATTTAAATGTCTTTACCGACCAGAATAATGGATAAGAATGCAGACCATTGACTATTCAGGGTGTGGGGAAATATACCTGCCTAAGTAAGCAGTGGTAGCAAAAGGGCCCTTGCGAGTAG
>XM_026933917.2
CCTCTGCCCATGTCCTcccctttttcttcttttgtctttctctcatgTCTGCGGTCGGTTCCCGGAAATCGACCTAACGTGCGAGTCTGCTCCTGTTAAGATGGAAATGTTGCTTCACTTATGAAAGGAGTTGAGGAGTTGGAGCAGAAAGGATGGATTTGACTTGACATGTGCCAAATGTGATGAATTAAAGGGTATTAGAGATGGCTTTGGAACCGAAGCAAGCGAGGCTGCTGTGCATGCTGTGTCTAACTTTCGGCTTCTtcgtggtggaggtggtggtgagTCGAGTGACCGGCTCTCTGGCGATGCTGTCCGATTCCTTCCACATGCTGTCGGATGTGCTCGCGCTGCTCGTGGCGCTGCTCGCGGTGAGACTCGCGGATCAGACTGCGGCCACGAGCCTCAACACGTTCGGCTGGATCCGCGCAGAGGTCATGGGCGCGCTGGTCAATGCCGTGTTTCTCACCGCGCTCTGTTTCACCATCTTACTGGAGGCAGTGGAGCGCTACACGGAGCCGCATGAGATTGAGAACCCGTGGGTTGTGGTGTGGGTCGGAGTGGCCGGGCTCGCTGTAAATGTGCTGGGGCTTCTGATGTTTCATGGCTACTCTGGACACGGACACGGCCACTCtcacagcagcaggaggagtGAGAAACCACAGACATCATCAGGGGAGGCTTACGATCTGCTGGTGAAGAGCCAGTGTCCTGGCCGAGGTGACCGTGCTGTTCAGGTTGAAGCAGACGTTGTCTCAAAACATAGCCTGGAAATCCCATTGAATGGGAACATCTCACCGGAGAAGCTGGAGCATGATTTAGATTCATCTTCCCAGCTCAACATGCGTGGAGTCTTCCTGCATGTACTGGGCGATGCCCTTGGCTCTGTCATTGTAGTAGTTAATGCtctcattttcacatttgtgtGGAGGACATGTGACAGTCAGGAAATATGTATTAACCCATGCCTCAGTAGCTACTGCTCTGACCACTGGCTTGTGAATACACACTTGGTCCACAGCAATGGCACCAGTACTGTCTCTGTAGCTGGACCATGCTGGGTGCTCTACCTGGATCCCACACTCTGCGTAATCATGGTGGCCATCTTGCTCTATACTACCTTTCCTCTGCTGAAGGAGTCAACCCTCATCCTGCTGCAGTCCGTGCCTAAGCAGATTGACATGCAGAGGCTGGACAAAAAGCTAAGGAGTCTTGAGGGGGTTCTGGCAGTCCATGAGCTGCACATCTGGCAGCTGGCCGGGAGCCGAATTATTGCCACGGCACACATTAAGTGCCATGACCCAGCCTCCTACATGGACACAGCCAAACGCATCAAAAGCTTCTTCCATGAAGAAGGCATCCATGCTACCACAGTCCAGCCTGAGTTCTCGGATGACAAAGAGCCCGGTGTCTCAGAGTGTGAACTGCCCTGTTACAGTCAGTGTACCCTGAAGCTCTGCTGTGACACGAGCTGGAGATCTAGATCTGAATCAGCGCTCATGTGCACAGACGACTCGTCCAGTCAAAATACTCCTCAACACTCCAGTGCTAGCTGGAATATTCAGCAAAAGCCAGAAGTTTTTCTGCAGATGGAGGTGGAATCCACAGTCTAGGTTTGATGAAGTTATGAGTATGCAATTTTTTCAGCAATCTTCGAAACAGAATCATGTCTGTTTAAGACAGAGTTATGTTTCTGAGAATCTCAAATCCTTCTGTTTTATTACCCCCAACTGTATGTAAACCTATTTAACTAATCAACTACATGCAATACCTCTTATCTCTTATACCTGTGGTTTCTATAATTGTAATTTTGAGAATGTGGAGCATATGGAGCACTTTATGGTATTAATGTTTACTTCTTGCTCATAGTAAAATACTATCTATGTGccttatataaattaaaaaaacacaataattacCCTGTATATTATCATTGTATTATCATTTTATctttatcatttcatttattttagtgtaacaaatgttttaaaggaGGGCATAATTGTAATGTCTGTTCTTAGAACAAAGTAACAAATCCTCTCAATAGGAATGTGTTAACTTAGTGCCAAGATGCCAGCCCTTATAATCTGATTAACAGTTAACTACATCTGTGCCaaactaaatatttatatcacctGCTACTAGTGCTTACATGAAAGGTTTTGTTATTAAGGTCATGAATGTTGCATGTTTTAGGGAGTGTCAGACTCTGTAGGACATCTTATCCTCTGCACAGCTGTCAAAATACACCATGTCTCAGATATAACTCCATATATATCCAATGTGATTACTTGTTGAAATTGTTTAAAGGGCTCAAAAATGTCCAATCCACTTTAGGCTTTGAATGGGTGGTTAAGAAACCATAGTTTAGGGATAGAGTGGGAACACAACTTCATGAGGGCACCATGATGCAATAAATAATGCAGTGTATGGGGCACTGTGTCAAAAAAACAATAGAGAATAGCCCTTATTCAGTCCTTGCACAGTCCTCCAATCAATCCCCTAGGATAAGAGACCGACTGTGATGTCTGCTATTGTGTAcctttttaagaaagaaaaggatTGGCACTTACAGTAATCAGGGTTTTATTGTCTTGTTCTGTAAGATGGAATGGTAGTAGATAGATATCCATTGATATAAGTACTATGTGTGTGGGAAACATATATGTTTGTTATGTTTGACTCCTTTGTTAGAGATGATCATGTCAGAATAGTCCTGATTTCAGGCAAGAGAGATTCATTCTCCATATTACAACGGAATTACTGTAATCAATGgataaacaaaacagttttgtaATTTGCCACAATCATGTTCTATGCACATTAagcacacacattctttcaAAAGAGTTTAGTGCTTgtgtttctcattttaatttgttcattgATTTAGATCTGCTTTTAGATAAGTATTCAATCAATACTGTGTGTCATGTTTTACACTGATGTAATCAAGTATTTGCCACCTTTTTAATTATCAGTCAGAGTTTTGAAGTTTAAGATTTAAATGTCTTTACCGACCAGAATAATGGATAAGAATGCAGACCATTGACTATTCAGGGTGTGGGGAAATATACCTGCCTAAGTAAGCAGTGGTAGCAAAAGGGCCCTTGCGAGTAG

Function

NR:

description
PREDICTED: zinc transporter 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K14688 SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933915.2 False 3015 mRNA 0.44 4 16940627 16953153
XM_026933917.2 True 3120 mRNA 0.44 4 16940627 16953297

Neighbor

gene id symbol gene type direction distance location
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding downstream 3188 16928845 ~ 16937439 (-)
tmem62 tmem62,LOC103132791 coding downstream 18580 16907722 ~ 16922047 (-)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 129411 16776703 ~ 16811216 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 165051 16761588 ~ 16775576 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding downstream 283257 16626955 ~ 16657370 (-)
impg1b LOC108270397 coding upstream 182181 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 741483 17694780 ~ 17699650 (-)
asap2a asap2 coding upstream 755321 17708618 ~ 17781052 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding upstream 971424 17924721 ~ 17927050 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding upstream 1238662 18191959 ~ 18230475 (-)
G166967 NA non-coding downstream 12431 16925276 ~ 16928196 (-)
LOC113538645 NA non-coding downstream 75200 16839081 ~ 16865427 (-)
G166865 NA non-coding downstream 195805 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 494622 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 673112 16267229 ~ 16267515 (-)
G167011 NA non-coding upstream 14159 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 99187 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 123685 17076982 ~ 17088776 (-)
G167079 myo6b,LOC108269576,LOC107666253 non-coding upstream 171208 17124505 ~ 17125588 (-)
G167091 NA non-coding upstream 183839 17137136 ~ 17137467 (-)
mideasb elmsan1 other downstream 41897 16873279 ~ 16898730 (-)
eml5 eml5,LOC108435760 other downstream 1177909 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1277132 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1618576 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1823263 15107120 ~ 15117364 (-)
htr1b htr1e,LOC108269541 other upstream 213571 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 662441 17615738 ~ 17624534 (-)
G167566 apob other upstream 1352446 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1422106 18375403 ~ 18382455 (-)
bahd1 bahd1,LOC108436768 other upstream 1646998 18600295 ~ 18642889 (-)

Expression


Co-expression Network