mrpl35 (mrpl35)


Basic Information

Item Value
gene id mrpl35
gene name mrpl35
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15843470 ~ 15847375 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934036.2
TTCCCACGGCGTGCAGTTTGTCCAAGCTGCGCACTGTAGGTCAAGGGTCACAGAGATTCAAGATGGCGGCCACCTTGACTAGAGGACTGTCAGGCGTGGTGAGGCCTCTGACAGTTCTGGGACAGTCCTGCATTAAGCACGCAGTCAGAGCTCCGCTGTTTCTTCCTCGCTTCTCCACACTTACTCAGCGACAGTTTGGTTTTAAACCGCTGCCATCTCATAATGCCTGTGATCTTCAACAGCAGACTCTACTGCAACGAGTCTCTCCTCTCATTCCATCACTGATGCAGCAACCCTGTAGAAACCTAACATATTTTAGTGTGAAGAAGGGCAAGAGGAAGACAGTGAGAGCTGTGGTGAAGAGGTTTCTGAGGCTGCACTGTGGCCTGTGGGTGAGGAGAAAGgctGGATACAAGAAGAAGCTTTGGAAAAAATCAGCAGTCAGAAAGAAGCGTTTAAGAGAACACGTATTCTGCAATAAGACTCAGTGCAAAAAATTAGACAAAATGACAACATCCTTTTGGAAAAGAAGAAACTGGTACCTTAACGATCCTTACCAGAAATACCATGATAGGGTTAACCTGTAAGTGTCCTTAGCCCTCTTATATTAGAAATGTATTGTTCTGTggagaaaatgtttgtttgtaaagTGTATTTGTCTGACTGTTAAGCTTACCATCCAGAACCACAACAGAGAATACAGTTTGCACTTTGTGCAAATTTAACATTactgaaaatatttgtttaagtTGAAAACCAATGTTTATGGACTCCTTCTGGTCAGTGTAAAGAGCTCTGATTATTGAAATAAACCTGTTTCAGAAA

Function

symbol description
mrpl35 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL35 (mitochondrial ribosomal protein L35).

NR:

description
39S ribosomal protein L35, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02916 RP-L35, MRPL35, rpmI; large subunit ribosomal protein L35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934036.2 True 825 mRNA 0.43 4 15843470 15847375

Neighbor

gene id symbol gene type direction distance location
hspa4l hspa4l,LOC107586823,LOC107561683,LOC107718856 coding downstream 19505 15811342 ~ 15823965 (-)
plk4 plk4,LOC107718857,LOC107561682,LOC107664465,LOC107586821,LOC107703461 coding downstream 34637 15802239 ~ 15808833 (-)
itpk1b itpk1,itpk1b,LOC108435758,LOC107561681,LOC107664466,LOC107703450 coding downstream 43806 15763858 ~ 15799664 (-)
LOC113538816 npc2 coding downstream 132726 15706625 ~ 15710744 (-)
atg2b atg2b,LOC107738272,LOC107664023 coding downstream 140749 15680921 ~ 15702721 (-)
si:dkey-21a6.5 NA coding upstream 662 15848037 ~ 15855183 (-)
nt5c1ab LOC108269929,LOC108425685,LOC106610886 coding upstream 11355 15858730 ~ 15863628 (-)
zfyve28 zfyve28 coding upstream 16745 15864120 ~ 15878344 (-)
rtkn2a LOC108269925 coding upstream 36023 15883398 ~ 15889538 (-)
egr2a egr2a,LOC108269483 coding upstream 58982 15906357 ~ 15914710 (-)
G166286 NA non-coding downstream 235948 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 352462 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 597561 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 598007 15244866 ~ 15245463 (-)
G165949 fam161b non-coding downstream 598972 15244285 ~ 15244498 (-)
G166319 NA non-coding upstream 48292 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 85782 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 152844 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 419854 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 597466 16444841 ~ 16446005 (-)
eml5 eml5,LOC108435760 other downstream 80752 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 179975 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 521419 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 726106 15107120 ~ 15117364 (-)
nenf nenf other downstream 761265 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 1025904 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1319493 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1768363 17615738 ~ 17624534 (-)
G167566 apob other upstream 2458368 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2528028 18375403 ~ 18382455 (-)

Expression


Co-expression Network