zfyve28 (zfyve28)


Basic Information

Item Value
gene id zfyve28
gene name zfyve28
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15864120 ~ 15878344 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934171.2
TCTGATGCCACTTCCGCAGTTGTACTGCGCTCATTCGCCAGCGGGCAGTGGAGCCGTGTACCTGTTTCAGCTCAGTCATGAGAAAGGGGAAACAACTGGGCGTCAGGACAAGCGGTTATAAGGACCGACGTCAGCGCTGCTGCTGCATCTATACAATGGAGTAATACTGTGtggatttatttaatgtatttgtttagCCCGCTCGACGCGGAGTTGTTTGACGCCAGGTAGCCTCTGAGCTAGCTAGCGTCAGTTAGCTGTCCGGGTTTTCAGTGGCTGGTGTTCAGGAGCTGCTCCACTCGCCAGCCCGGGTTTATCACAGGGGGACAAAGGGTCGGTAAAGCTGGCGAGGTAGCCCCATGATGAATCGCTTCCGGAAGTGGCTGTATAAGCCAAAGAGGTCGGACCCTCAACTACTCGCCCAGTTTTACTATGCAGATGAAGAGCTGAACCAGGTGGCCTCGGAGCTGGATAGTCTGGACGGCAGGAAGGACCCTCAGAGATGCACACTGCTCGTCAACCAGTTCCGCTCATGCCAGGACAATGTGCTGAATATCATAAACCAGATCATGGATGAGTGTATACCAGAAGACCGAGCAAACAGAGACTTCTGTGTGAAATTTCCGGAGGAGATCCGCCATGACAACCTTGCAGGACAGCTATGGTTTGGGGCAGAGTGTCTAGCAGCAGGCTCAATCATCATGAACCGGGAGATCGAGAGTATGGCGATGCGGCCGCTGGCCAAAGACTTGACACGCAGTCTGGAGGAGGTGCGCAACATCACCCGTGACCAAGCACTGCGAGACCTCAACTTCTACACAGAGCGCATGAGGGAGGCGTTGCGCCAGTTTGACAGCCTTTTTGCTGAGTTTGAGCTCAGTTATGTATCAGCCATGGTGCCTGTAAAGTCTCCTAAAGAGTACTACGTCCAACAGGAGGTGATTGTGCTCTTCTGTGAGACTGTAGAGAGGGCCCTAAAGCTTGGCTATCTCACACAAGACATGATCGATGATTATGAACCTGCTCTCATGTTTACAATCCCCCGACTAGCTATTGTGTGCGGACTTGTTGTGTATCCTGAGGGACCTCTTAACCTGGAAAACAAAGCAGAGGACATGTCTGAACTCTTCCGACCTTTTCGcacattactgaaaaaaattagGGACCTGTTGCAGACTCTGACGGAAGAGGAGTTAACGACTCTGGAGCGGAATCTGTGTATCTCACAGGATGGGGAGTTTCCTGGAGACCCCATCTCCTCTACCCCGGAGTCTGCTACCTCTATCAACTCCAAGAGTCAGGTGGAGGAGTCACAGAAAAGAGAAGAGCAAAAGGAAGTGGAGAGGGTGACAGAGCTGGCTCTGTGTTCCTCTCAACGTGAGGAGGATGATGCATGGGAGAAGGACCAGGAACAGCAAGAGGTCCCAAGTGAAGGAGAGGAGGACACTGAAGTGGACCTGGCCTGTTCCATGCAGTATGATGAAGAGGAGATTGAGCAGCTCAACATGATGGTACACCGTGTTGGTGATCATATGTCCACACTGCTCTCACCCCCAAGCCAGAGGCCATCTCCAGCTCATTATCGCCAGAAAAAAAAGCCCAGCGTGGGCGGGCCTGGTGTGTCCTCCAGCCTTGGGGAATCGAGCGCACCATCAAGCACTGAAAACTCTCCTCACCGAGCTCCTGGCTCCCAACACGAGGAAGATGAGCGGGTCTTCTTCATGGACGACCTGGAAGGCATGGGCGGTGGTGGAGATGCTGGAACTAGCTCAGGGGAAATCCGTCAGGGACAGCGAGTCTCTCCCATCGTGAACCTCAGCTCCCTCAAGCCCATCAGGCCAGAGCCTACAAGTGACTCCACCTGCAATGGATGGATGACGGCTTGTCAATCAAATGAGGATTTTGATCAGAGTAGCCAGGATAAACTGTGCCTCTCTTCTGGACCTGCAGGAACCTCAGAATCATTACCACTTGTGAATGGCTGGGAGGGGCAGCTGGACGGGCAGGAAGGGGAAGGCGGGGAGCCAGCAGAGGTCATTGCTCACCGGACAGGCGGGATGAAGCTGTCGGCCACTGTGATCTTTAACCCACGCTCACCTAACCAGCCTGATTTGGTGGTTTTGCCACGCTCAACTGAGGGAGCTGCACACCGCCTGCTCAATTCCTGTGTGTGCTGCACTGCTGGATGTGTCGATGCCCATGATGAACCCAGTACCACAGATACCACCACTGGAAAGGGGAATCTGGAGTTTAGCAAGTGCAAGCTCACCATCACAAGCACTGTTATCCAGTCAGCAACGGGTGCCTGTGGCACGGGTAAGGGAGATGCCCCTTTGCCCCTCCCACCTCCACCTGGCCCACAACAATTGAGGGAGGAGGATGAGGGCCAAGAGAGAGGAAGGCTTCCTCATGCCCCCTGTTGTGAGAAGTGCCTTGCCAATAACTCCAAGCTGTCCCCACATAGAGACACTGAAGAGGACGAGCCAAGAGATGAATACCCCCATCAGGAAAGAGCCTGTCGAGTAATGGCTAGTAATGGCTCTGCAGCAAAGGAGACACAGCCCAAAGAAGACAGCCAAAATGACtccagTTTACAGGTATCCCCTCTAAGTTCAGGCACCAGCAGTGActgtgagagtgtgtctgtCACCACTTGCAGTCTTTCCAGTTCATCCACACCCAGTTTGACCACCAGCTCTGACATGTCTGAGGAGCTTGATCACCAGGAGCTTCAGCTGGCCCTGCAGGCTTCTAAACTGGTTGCTCACAACAAAATACGTGCTCGCTTCCATAGCAGTAGTGACCTCATCCATCGTCTGTTTGTCTGCATATCAGGTGTGGCTGATCAATTGCAAACAAATTACGCAAGTGACCTGAGGAGCATCCTGAAGACGCTGTTTGAGGTTATGGCAACAAAATCCGAGCAAGGGGAGAATCAGAAGCAGAAGAAAGGGCCGAGAGTAGGAAGTGCTGGATTAGAAGACTGCGCTCTTTGTCAAGAGACCATGACCTCATCGGAACTCGCAGCAAAGGCGCGGGACGGCCAGTTTGAAGaccCTCCTGAGTGGGTTCCGGATGAGGCCTGTAACTCCTGCATCGCCTGTAAGGCTCCTTTCACTGTCATCCGGAGGAAGCACCACTGTAGAAGCTGTGGAAAGATCTTCTGCTCGCGCTGCTCTTCACACTCAGCACCGTTACCCCGCTATGGTCAGATGAAGCCTGTGAGAGTGTGCACTCACTGCTACATGTTTCATGTCACACCTTTCTACAGTGACAGGACTAGTGTTTGACTGTAGCCCTGCCTTGCACCACCATCACACATGGACATAAGCACATTTATCATGCGGAGAGATGGAAACGTTTAGCGAAACctgcacacacttttttttttttttttttttttttaaactggttgAGTTTGTGCATGTGCACAGACACgcacatttatttaacctaaaattatatatataaatgtaaatacggATATATTACAATACTGGAGAAGCAACACTGAGCAAAGAACAAATTAGCTTTGAAGTACTGATTCATAAATTAtctaaagttaataataaatgcttATTATCAAGCACACTGAGAAATGGCGCCAAAGTATTTGCTGTAATTTTCTTAAATAGAGCATGAAGTGAATTGACAGAAGTGAATTGTTATCAGAGGTCCAGTCTTAGGGACTCTCACTCAGTGATTAgttagattttaaaattttcttagTCTTTTGCTAATGGCGATTTGATTTAATAGTGTCAGATGTTCAATAGGGCTCAGATTCTTTACTGAATGTAAACCGTGACGAACACGTGAGCAACTGTGACAAGTATAAAGacaataatattaacattatttgcaCCATTGATTATGCCAATATGTGGTCATCATAACATactgaagagttttttttttttattactattcaaaatgttttattcaagaAAAGATGCTGCTCTCTGTAATATAAAAAGTGAGGCTTTAGAATATGTGGAATGGCTGAAAATGATATGTATATACGCTGAAGTGGTTAGTATCTAATAAAATAagaagatttttcttttatgcTCTTAATAGCAATGAATGTGTAACCATatagatgctttttttttctattaatattTACTGAACTGGAAAGTAATTGCCTTTTACAGCAATGTCTGATCCCTCAGCTATTCTTTTAGACAAGTCCGTCCTGCCCTTCCCCCAAAAACTTAcaatctgagattttttttaatgtaatcacATGGACTTTGATCTTTTGCATGCTTCTTAGCAGTTCTTGAGGTGACAGCTTCTCTAAACACACTCATTTGacctagtttaaaaaaaaacagacgtgGGGAAAACTTGATTTGGGCATTACACAGTGCTGTAAGAATAATATCTCAGCACTATTTTTGGTAGAAGTGAACAGTCCACCCCCTACCTCATCTGTTTTGCAGATTTCCTCTCAGTATTGTACCACTTAACCTCAACTGTCtgacttccaaaaaaaaaaaaaaaatctttacaattgtgtgcttctttAAGACATCCCTTCATTGCCCCAGCATTTAATGTCttcaatatttctttttctaactATTGGGAAAATGCACCTTTATTTTTGTGCTTGAATCTTTAGCTGTCAAATATAATCCTAAATTTCATAAACAGTAAGCTATTAAAATCTTATAAGGTCAATAATTTTATCAGGCTTTTACACATAGAATCTAATGTTTGTATTCTTGTTAATAACTTAATTATAAGCTATTAACTAACTATAAATTATAATGCTATCCACATTCGTCCCATTAGTTCTAAACAAAACTACTTTTTTGTTTGCAAAAATGATACTTTGAGAAAATTCCTTTATAAGAAAATTTTTACTCTAGTTTCTCAGTTCATACAGTTGCCTTCTTGTTCTTCACTCTATAAGAGTTTACCTCATTGCCTATACCTCTATGCTTATATAAAGTTCTGAGATTTGACCAAGTTAGAGAAGTGTGAACACACTTTAAGATACTAGTATTCACATCAGTGTTTCAAATTCTGCTAACAATTCCACATTATATTTATGAGATTTAATGGCCCTTTCTGCAATGCTTATGTAACATTGTAACAGTACATATGCTAGCTATTAACAGCCCTTGAATCTGTCCTGCTTTTTCAGACACCGTTTCTGGTATCCTCAATGTTTGAGGTCTTCTAACAGCAGTACTCGTTGTACATAGTACATCAGTGTCTGCTAACTCAAAGCTTTAAAATACAGTACCTCTCAACTGCTCAGTCTTTATGCTTatattatttagttagttagttgttttcattttcagctaaataagcttttttttttgttattgttccCACACATCTTGGCAACCAATTGTCTGCTACTGGGGTCCATGGGAATACTCTGTTGCTAGAAAATTGCATACAATTGTTTATGGCATAAGAAGCATATGTATTCTAGCCTCAAAGATGTAAAAGGCTCCACACTTAAATCTCTTTTGATAGCTTTACACTAGGTTCCCTTATGACACTGCTTCCTTTTTAATGTTGTTGCTGCTCTTCAGGACTATGACTGTACCTTGCCATGATGCTAGGGAAAGGTTAATCTTTAAAGTTCTTAATACTCAAATTTGATAATGCAAACCAACAAATCAACGAAAAGTTGAGATCTTCCCATGGTAGTGTTTCTTTGCAAATCCAGCTACTGACCTGGTGTGTAAAAAGTTTGAAATTTACTTGCCACCAATCCTCAGGCCTCAATAATTGTGTggtcatttttgcattttaagaagaaaaaaaaatctgtttcttttacaaagaacaaaaatgatgataatatatataaatgtacaaataagGTTTTTCTGTATAAATGATCTGTGAGAGAATTGTACACCCTATTTATTCAaagcttgtttttattttataatggcTGTTTCAATTCAATAAGACATAAAGGAGAGCTTTTGAAAGTCTTAAATTGAGTATTTGTCATGCAATGAAAGTAATAAAT

Function

symbol description
zfyve28 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in negative regulation of epidermal growth factor-activated receptor activity. Predicted to be located in cytosol. Predicted to be active in early endosome membrane. Is expressed in axial chorda mesoderm; immature eye; and notochord. Orthologous to human ZFYVE28 (zinc finger FYVE-type containing 28).

NR:

description
PREDICTED: lateral signaling target protein 2 homolog isoform X1

GO:

id name namespace
GO:0007175 negative regulation of epidermal growth factor-activated receptor activity biological_process
GO:0005829 cytosol cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K24780 ZFYVE28, LST2; lateral signaling target protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934171.2 True 6010 mRNA 0.44 14 15864120 15878344

Neighbor

gene id symbol gene type direction distance location
nt5c1ab LOC108269929,LOC108425685,LOC106610886 coding downstream 492 15858730 ~ 15863628 (-)
si:dkey-21a6.5 NA coding downstream 8937 15848037 ~ 15855183 (-)
mrpl35 mrpl35 coding downstream 16745 15843470 ~ 15847375 (-)
hspa4l hspa4l,LOC107586823,LOC107561683,LOC107718856 coding downstream 40155 15811342 ~ 15823965 (-)
plk4 plk4,LOC107718857,LOC107561682,LOC107664465,LOC107586821,LOC107703461 coding downstream 55287 15802239 ~ 15808833 (-)
rtkn2a LOC108269925 coding upstream 5054 15883398 ~ 15889538 (-)
egr2a egr2a,LOC108269483 coding upstream 28013 15906357 ~ 15914710 (-)
jmjd1ca LOC108270245 coding upstream 39457 15917801 ~ 15981784 (-)
ahsa1b ahsa1,LOC108425677,LOC107732084 coding upstream 108742 15987086 ~ 15992896 (-)
si:dkey-229e3.2 LOC108269466 coding upstream 122718 16001062 ~ 16007423 (-)
G166289 NA non-coding downstream 17865 15664486 ~ 15846255 (-)
G166286 NA non-coding downstream 256598 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 373112 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 618211 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 618657 15244866 ~ 15245463 (-)
G166319 NA non-coding upstream 17323 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 54813 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 121875 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 388885 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 566497 16444841 ~ 16446005 (-)
eml5 eml5,LOC108435760 other downstream 101402 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 200625 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 542069 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 746756 15107120 ~ 15117364 (-)
nenf nenf other downstream 781915 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 994935 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1288524 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1737394 17615738 ~ 17624534 (-)
G167566 apob other upstream 2427399 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2497059 18375403 ~ 18382455 (-)

Expression


Co-expression Network