si:dkey-21a6.5


Basic Information

Item Value
gene id si:dkey-21a6.5
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15848037 ~ 15855183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934197.2
AAGTCGGCTTGTTCCGCACTGAAGACGCGCGCGCTCGGGTTCAGCTTTTTACGACAGCTCTGTGGAGTACAGTGTGTGGTGTGGAGGCTGGTTTTACTTCTCCTAAAGAATTCCTGTTTAATTTACAGTGATTTCCACAGCGCTCAAACTCACATGATTAGTCATTTGGCGTAGGGTTTGAGGAAGGAATGAGCGCAGAGTGACGAAGCTGATTTTTATTTCCCAGTTGAAGAGTTTTGAAGCTTCAGCCATGAACTCGGTGAGATAAATCAGATGGTGGGACTGGTTGAGGAATCACTGAAACATGGCACATTTGGGAGTCCAGGCTGTTGTCGTGGCACTCGTGTGTTTGCTCGGAGCAGTGAGGAGTCAGACTACCCTCGCCCCCGCTGTGACTGCCACCACAGTTATCGAGAATGTAACTGCCACTACGGTCACTGAGAATGTGGCCACAACCACTCCCATCATGCTCAGCACCACTACACCTGGCTGCTCGGTTTTGAACATCTCCAGCTGTGAGGCCTGTGCACCAGGCACCTACTATGACAATGAGACATTGCTGTGTTCATGTTGTCCGGAGCCTGGGCTGTGTATTTTCCCTATAGGCTGTCGTTCCTGCTCACTAGGTTTCTATCAGCCGCTAGCAGGCCAGCAGACGTGTCTTCCCTGCACACCAGGCTTCTACACTAATCTCACAGGGAGCCCTGTGTGTCAGGCTTGTCCTCCTGGTTCTTACACCAATGAAAGTGGTTCAGTCTCATGTCAGGCCTGTGCACCAGgTTTTTATATATCCGGACAGAATGCTACTGTTTGTAACCCGTGTCCCGAGGGCACATACTGCAACTCCTCCAGTTGTGCTCAGTGCCAGATGTGTCCTTCCGGCTTTGAAGCCCTAAAGACTGGCAACAAAGAGTGTTCCCCCTGTCGCCCAGGAATGCACAAGACCTCTCATCAGAGAATGTGTCAGATCTGCAGCAGTGGTTTCTATCAGATCCACTGGGGCCAAGAGAACTGCGACATCTGCCCTGAAGACCACTACTGCCCAAGTCCAGATGTGAATCCAATCCAGTGCCCCAGTGATGCGTTTTGCCCTGAGGGCAGCACTGCTCCAGGTTATTGCATGGAGACTTTCTTCAGGAAGGCTGGAGACACATGCGAGCTTGCTCCTGTCACCATAGCTCTCATTGTCATTGGAGGAGGATTGTTTCTCCTGTTTATTGTCCTCCTGGTTTTTCGGAGGAGAAGAGATACAGACAGtgagctgtctctctctcgtgctCCTCTTCTGCGGAAGGACCGTCCCCCTTGTCATGTGTATGGAGTCCCGTGTGATGCGGATCCTGTGTATGCAGGGTGGTGATACATTGACAATGCagagagcaaaaacaaacacaaaatccaTGTCAAGCTATTGCATGCTCCTATGCTGTGCATTTGCACATCttctgaaaatgaatgtttgaCACAATATTGAAAACTTTTTGATAAAGTTCATAGCTGTTTTCACTGAATGTTCACTCAGACAAAtcaaactgcctttctcttatTATGCTGTTCACTGCTGTACACTGCAAACTGGTTGAATGAATGCATAGGAGTATCCTTGtagaagtatttttttaacaaggtCAATTGGGCCAAATCTGACAATAATTTTGCCTGTAAAAGTACTGAGAGAAactgttttgtatttaattattgtttaattagTGCACTGGTCTGTAATATGTGGTACTAGTTAAGATTTTGATTGTGCTGGACTGTTGCTGTTGCCTGTATGATTGTATTTATTCACTTGTGCCCCTTGTTGTTTTATTACATATGGTACTTAAGGAACTGTTTATTATGGAAATGAGTAATCTTTTTGGTATTTAAAAAGTTAATGCCATATTGGAACTTTTAGAAGAAGCAAAATTGGCCTTGGCTAGAAAATAAACTTTGCACAAGTTTCAAGTGAATTCTCATGACTATTACAAGATTGttcttttgatgttttttaGTTGAGTATTTTTTCCATA

Function

NR:

description
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934197.2 True 2018 mRNA 0.45 9 15848037 15855183

Neighbor

gene id symbol gene type direction distance location
mrpl35 mrpl35 coding downstream 662 15843470 ~ 15847375 (-)
hspa4l hspa4l,LOC107586823,LOC107561683,LOC107718856 coding downstream 24072 15811342 ~ 15823965 (-)
plk4 plk4,LOC107718857,LOC107561682,LOC107664465,LOC107586821,LOC107703461 coding downstream 39204 15802239 ~ 15808833 (-)
itpk1b itpk1,itpk1b,LOC108435758,LOC107561681,LOC107664466,LOC107703450 coding downstream 48373 15763858 ~ 15799664 (-)
LOC113538816 npc2 coding downstream 137293 15706625 ~ 15710744 (-)
nt5c1ab LOC108269929,LOC108425685,LOC106610886 coding upstream 3547 15858730 ~ 15863628 (-)
zfyve28 zfyve28 coding upstream 8937 15864120 ~ 15878344 (-)
rtkn2a LOC108269925 coding upstream 28215 15883398 ~ 15889538 (-)
egr2a egr2a,LOC108269483 coding upstream 51174 15906357 ~ 15914710 (-)
jmjd1ca LOC108270245 coding upstream 62618 15917801 ~ 15981784 (-)
G166289 NA non-coding downstream 1782 15664486 ~ 15846255 (-)
G166286 NA non-coding downstream 240515 15605903 ~ 15607522 (-)
LOC113539013 NA non-coding downstream 357029 15481130 ~ 15491008 (-)
G165951 NA non-coding downstream 602128 15245584 ~ 15245909 (-)
G165950 fam161b non-coding downstream 602574 15244866 ~ 15245463 (-)
G166319 NA non-coding upstream 40484 15895667 ~ 15896570 (-)
G166380 NA non-coding upstream 77974 15933157 ~ 15933437 (-)
G166390 NA non-coding upstream 145036 16000219 ~ 16000512 (-)
G166484 NA non-coding upstream 412046 16267229 ~ 16267515 (-)
G166633 NA non-coding upstream 589658 16444841 ~ 16446005 (-)
eml5 eml5,LOC108435760 other downstream 85319 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 184542 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 525986 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 730673 15107120 ~ 15117364 (-)
nenf nenf other downstream 765832 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 1018096 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 1311685 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1760555 17615738 ~ 17624534 (-)
G167566 apob other upstream 2450560 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 2520220 18375403 ~ 18382455 (-)

Expression


Co-expression Network