LOC113538831 (LOC108269613,LOC108441832)


Basic Information

Item Value
gene id LOC113538831
gene name LOC108269613,LOC108441832
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19477213 ~ 19492363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934235.2
cacacacacacacgctagaGTGTGGCTTTTTTCACGCACTCATATGTTCATTCCACTGGAATGGACATAGATATCTCTGTGCTGTTTACCTCCACCGCTGGATCAACTGCTACTCAACTACTCCATTTACCCAATTACGGTCAGGACACAGACGATCATGAGCAGCATTGTGGGAAAGTTTACTAAAGGAGCTTCCTGGGAGGAACTCATTCAGGCAAGCATCCAGTCATTCGATGACGATGGTAATGTTTGCCACAGCAGCCATCTTTTGAACATCACTCTCACCATGCACCGATTACTACTGTCCTCCAATGATCTCCTGGACAAGCTGATTATCCTCTTTAAAAATACACTGGAGGATGAAAAATCTACAGCATGCCTGAAAATATGTTATTTCATTCGATATTGGATAAGTGAGTTCTGGACCATGTTCCAGTTGCACAGCTGTCTGGCAGAAACTTTGGAGCAATTTAAGGAGCTTATGAGGGAACATGGACAGGAGAATCTCTGTCCTTTACTCCAAACCAAGTGGATGGGCGACAGAGTGTGGTCTCACAAAGCCAGTCAGAAAATCAAGGTAAGAAGCAGCAGGAAGAGGAAAGTGTCTTTGCTCTTCGATCATTTGGAGCCTGTGGAGTTAGCTGAACATCTCACCTACTTGGAGTTCAAATCTTTCTGCAGGATATCTttcGCAGATTACCAGAAATATATCCGAAATGAGAGTTTGTCAGAGATCCCCACGATGGAACGTTCCATTGCACTGTGCAATGGTATCTCCCAGTGGGTGCAGCTCATGGTGCTCAGTCGACCGACCCCTCAGCTCCGAGCAGAGGTTTTCACCAAGTTCATCTATGTAGCGCAGAACCTCCATCAGATGCAGAACTTTAACTCTCTTATGGCTGTGGTGGGAGGCCTCTGTCACACGTCTATTTCCCGCCTGAAAGACACGTGTACACACGTGCCAAATGAAACCACCAAGGTTCTGAGTGAAATGACCGATCTGCTCTCATCATCTAGAAACTACGAGAATTACAGACAAGCATACAGCAAATCCACAGGCTTCAAGATTCCTATCTTGGGGGTCCATCTGAAAGACTTGATTGCCGTGAACGAGGCCATGACTGACTATGTAGACAACGGCAAGGTCAATGTGCAGAAACTTCAGGCCCTCTACAACCACATAAACGAACTCATCCAACTGCAGCAGAATCCACCACTCCTAGATGCAAACAAAGACCTAGTGCACTTACTGACCCTGTCTCTTGACCTGTACTACACCGAGGATGAAATCTATGAGCTGTCCTACGCAAGAGAGCCGAGGAACCACAGAGCACCTCCAGCGACTCCTTACAGACCCCCTGTGGTGGTGGACTGGGCTTCAGGTGTGGCTCCCAAGCCAGATCCCAAAACCATCAGCAAACATGTTCAGAGAATGGTCGATTCTGTGTTTATGAATTACGACCATGACGAAAAGGGTTTCATCTCCCAGGAAGACTTTGAGAAAATTGCTGCGAGCTTTCCTTTCTCATTCTGTGTTACAGACAAGGACAAAGACGGGCTCATCAGCAGAGATGAGATCACGGCTTATTTCATGCGGGCCAGTGTCATCTGTTCCAAACTCGGTCTAGGCTTCTCTCACAACTTCCAGGAAACAACATACATGAGGCCTACCTTCTGTGACAACTGCTCAGGATTTTTGTGGGGCGTCATTAAACAAGGCTACAGATGCAGAGACTGTGGAATGAACTGCCATAAATCCTGCAAGGATCAGGTAGCATTCGAGTGTAAGAAGAATGCCAAAccaaacagcagctcagactgGAGTCCACCTTCTAATACGCCAGATACCTCAACACGTGGTCATGATGATGAAACTCGGTTCATATATCCACCTGATGCTCTAACAGACAACTCTGAGCGCCATAAAGAGTTTAGCCCGAGCACAGCGCCAAGAACCTTAAAGGTGCACAGAAGTACTCAGACAGAGGGAACTCCATCATCCAGCCATGTGCAGTCTTCTCTGCTGCGTCCAAGCGGTCCACCCCTCACACCATGCCCGAGCCCTGTTCCTCAGCGCAAACGAGTCTGTGCCAACAAGACTCCCAACACACTCAACCCTGCTGAGGAAAACAAGCCCACCTATGAAGCTCTGGAGAAGgagaaTCAGTCTCTACAGAAAAGCAACGAGAGGCTCCAGAGAAAGCTAAAAGAAGCCGAACGTGAGGTGGAGATCCTAAAAACGCTCTTGAAACGGCATGCTCTCCGTCCAGTGGAGGAGgattcctcttcatcttcttgATCTTGTAAATATTTTGGCTGTTGAAACTCAAAATGCAGAACAGCCCTGGACTCATGGACTTGCAATCCACTTTACCCTACTATATTTATGATGGTTATAATTCACTTGAA

Function

GO: NA

KEGG:

id description
K04350 RASGRP1; RAS guanyl-releasing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934235.2 True 2409 mRNA 0.47 16 19477213 19492363

Neighbor

gene id symbol gene type direction distance location
gcfc2 LOC108270421 coding upstream 2527 19460183 ~ 19474686 (+)
ywhaqb LOC108269934 coding upstream 19654 19449741 ~ 19457559 (+)
dhx32b LOC108269478,LOC108436743,LOC107592761 coding upstream 98439 19369052 ~ 19378774 (+)
adam12 LOC108270250,LOC108436745 coding upstream 124900 19227546 ~ 19352313 (+)
LOC113538933 c9h10orf90,LOC107594852 coding upstream 252372 19204852 ~ 19224841 (+)
LOC113538896 LOC108269628 coding downstream 128484 19620847 ~ 19630120 (+)
mthfd1b mthfd1,LOC108269612,LOC108232073 coding downstream 153920 19646283 ~ 19669547 (+)
plcb2 plcb2 coding downstream 286205 19778568 ~ 19809259 (+)
LOC113538872 ankrd63 coding downstream 344895 19837258 ~ 19839847 (+)
spint1a NA coding downstream 430770 19923133 ~ 19937793 (+)
G168011 NA non-coding upstream 498737 18977016 ~ 18978476 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 635603 18839609 ~ 18841610 (+)
G167909 NA non-coding upstream 639891 18837091 ~ 18837322 (+)
G167735 NA non-coding upstream 828651 18648355 ~ 18648562 (+)
G167730 NA non-coding upstream 833795 18642292 ~ 18643418 (+)
G168175 NA non-coding downstream 30791 19523154 ~ 19524855 (+)
G168207 NA non-coding downstream 104060 19596423 ~ 19596967 (+)
G168504 inafm2 non-coding downstream 280527 19772890 ~ 19774666 (+)
G168585 NA non-coding downstream 395564 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 495285 19987648 ~ 19987870 (+)
prlh2r LOC108269650,LOC108425589 other upstream 898905 18569379 ~ 18578308 (+)
ldah ldah other upstream 1103133 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1554462 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 1770381 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 2046462 17385507 ~ 17430751 (+)
G168191 NA other downstream 182550 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 230417 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 387372 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 420980 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 550114 20042477 ~ 20042935 (+)

Expression


Co-expression Network