abraxas2 (fam175b)


Basic Information

Item Value
gene id abraxas2
gene name fam175b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19001132 ~ 19012954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934349.2
GCGTGCGCAAGGGATTGTGGGAGAGGCGGGTATGTTTCCATCATGGCGGCGTCGATTTCGGGTTATACTTTTAGTTCTGTGTGTTATCACAGCGCTAACAGCAACTCCGACCATGAGGGATTCCTGTTGGGAGAAGTGAGGCAAGAGGAGACTTTAAGTATAAGTGACTCTCAGATTAGTACTTCAGAATTCCTGCACATAGTAGAGGTCCATAATCATGAACCATGTGCACAGCTCTTTAGCTTTTATGACTACGCAGGTAAAGTCAATGAAGAAAATCTCAACCGAATCCtcaaagacagaagaaaaAATGTTATTGGCTGGTACCGGTTCCGCAggaacacacagcagcagatgTCGTTCAGGGAACAGGTGATCCATAAGCAGCTCACGCACATACTGGGCATCCCAGATCTCGTCTTCCTTCTCTTCAGCTTCATCTCAACAGCCAACAGTTCAACACACGCACTAGAGTACGTTCTCTTCAGGCCCAACAGAAGcagataTAACCAGAGGATATCTTTGAGTATCCCAAACCTGGGCAACACCAGTCAGCAGGAGTATAAAGTGTCTTCTGTCCCCAACACCTCCAAGAACTACGCCAGTGTTATTAAAGAACATGGAGCTGAGTTTTTTGACAAGGATGGAGTGATGAAAGATATACGAGCCATTTTTCAGGTGTACAGTGCCCTTCAGGAGAAAGTGCAGGCTGTTTGTGCGGAGGTGGATCAAAGCGAACGAGTGAAGGAGAAAATCCAGGAGGAAGTTAAAAATCTGAAAGAGGAGATTGCTCTCAGAAAACGTAGCACTGCTGCAGAGGAGAGGAGAAACCAAGAGTCTCTGAATTCTGACGTCCACTCACTGCAGGATGACTCGGTTCTGTCTGATTCGTCCCCTCCCTCACTGACACGCGTGGCTCTCCAGAGCCCTCCACTAGAGCAGAGCCTGGATTGGCATGCAAACTCAGAGCCTGCGGCACTTTACACCAACGAGCTGGCACCTGACCCGCCCAGTGCCATCCTGCTGCCCCGCCCCCAGGCCGTGGGCTCGCCTGGACATCCCTCACCTAGTCCAGGCATAGGCATGGGCAACGGAGACGGCTCCAGCTCCGACTCTCTAAACCGGCACACCATTGGCCAGGAAGACCATGATGACGAAGAGGATGATGACGAAGATGAGGACAGTAGTGAATATGAGAACTTAGTTAGCGAGCAGTTTCAATCCCCTCATTTGACTGAATCTTTAGGACGGCCGGCCACACTTTGGCCTGACGGAGACGCTCATAGCTCCAGTGGCTCGTCCTGATCCAGCACCCAAAATCAGGGGAGAAAAGGACAAACGGACAGAGCTAGACATTatgggaaaagagagaggaggaaagagagggCTGAGAAAGAATGGCAGGTGACCACTGTATCTTGCTGCAGGACGGCAGCAGGGGAAAATCCCTTATTCACACCTGCCATTTTgaccatttctctctctctctctctctctctctctctctccctctctcccccttcATTTCGCTCTCTCGTTCTCATGTCCTCAACTCTCTCTGAGAGGGGAGACGTCATCCCACTTATCGATTACTTATAAGCACTGCTACCGACTTAGATCATGCGATTATTAGCATTTACCTCTTGCACTATTTTTGGCCTTCTCTCAATCCGCATTCAAGTAGAAAAAGCAAAGGGAATGATGTCTTCTGCGGCCTTCAAACTCATCTCCATGTGAGCTTTCTTGCCACTGTCAACTGTTTTTCAGTTTGACTTAACAAATCTGACTGATTTTATCCCCAACTCATAAAAACTGAACTTTCACTCTACAGTAACAGTCGTTTTTTGTTGGCCTCTTTATGGAAATTACCAAAAAAGGATACTTTGGCCATTTATGTTACTTTGATTAGGGGTGCTTATATTacttttacaaatacaaattagtGATaccatttgatttgatttgatttaaacagaaaaagtcTCCCTAAATGAACAGATATTTTGTGTTCATCTGCACTTTTCATTGTACTTTATAAGAATCCTATCAGTCATATGGTTGGAGTAAACATCTCTCTTCCATGCCA
>XM_026934350.2
GCGTGCGCAAGGGATTGTGGGAGAGGCGGGTATGTTTCCATCATGGCGGCGTCGATTTCGGGTTATACTTTTAGTTCTGTGTGTTATCACAGCGCTAACAGCAACTCCGACCATGAGGGATTCCTGTTGGGAGAAGTGAGGCAAGAGGAGACTTTAAGTATAAGTGACTCTCAGATTAGTACTTCAGAATTCCTGCACATAGTAGAGGTCCATAATCATGAACCATGTGCACAGCTCTTTAGCTTTTATGACTACGCAGGTAAAGTCAATGAAGAAAATCTCAACCGAATCCtcaaagacagaagaaaaAATGTTATTGGCTGGTACCGGTTCCGCAggaacacacagcagcagatgTCGTTCAGGGAACAGGTGATCCATAAGCAGCTCACGCACATACTGGGCATCCCAGATCTCGTCTTCCTTCTCTTCAGCTTCATCTCAACAGCCAACAGTTCAACACACGCACTAGAGTACGTTCTCTTCAGGCCCAACAGAAGataTAACCAGAGGATATCTTTGAGTATCCCAAACCTGGGCAACACCAGTCAGCAGGAGTATAAAGTGTCTTCTGTCCCCAACACCTCCAAGAACTACGCCAGTGTTATTAAAGAACATGGAGCTGAGTTTTTTGACAAGGATGGAGTGATGAAAGATATACGAGCCATTTTTCAGGTGTACAGTGCCCTTCAGGAGAAAGTGCAGGCTGTTTGTGCGGAGGTGGATCAAAGCGAACGAGTGAAGGAGAAAATCCAGGAGGAAGTTAAAAATCTGAAAGAGGAGATTGCTCTCAGAAAACGTAGCACTGCTGCAGAGGAGAGGAGAAACCAAGAGTCTCTGAATTCTGACGTCCACTCACTGCAGGATGACTCGGTTCTGTCTGATTCGTCCCCTCCCTCACTGACACGCGTGGCTCTCCAGAGCCCTCCACTAGAGCAGAGCCTGGATTGGCATGCAAACTCAGAGCCTGCGGCACTTTACACCAACGAGCTGGCACCTGACCCGCCCAGTGCCATCCTGCTGCCCCGCCCCCAGGCCGTGGGCTCGCCTGGACATCCCTCACCTAGTCCAGGCATAGGCATGGGCAACGGAGACGGCTCCAGCTCCGACTCTCTAAACCGGCACACCATTGGCCAGGAAGACCATGATGACGAAGAGGATGATGACGAAGATGAGGACAGTAGTGAATATGAGAACTTAGTTAGCGAGCAGTTTCAATCCCCTCATTTGACTGAATCTTTAGGACGGCCGGCCACACTTTGGCCTGACGGAGACGCTCATAGCTCCAGTGGCTCGTCCTGATCCAGCACCCAAAATCAGGGGAGAAAAGGACAAACGGACAGAGCTAGACATTatgggaaaagagagaggaggaaagagagggCTGAGAAAGAATGGCAGGTGACCACTGTATCTTGCTGCAGGACGGCAGCAGGGGAAAATCCCTTATTCACACCTGCCATTTTgaccatttctctctctctctctctctctctctctctctccctctctcccccttcATTTCGCTCTCTCGTTCTCATGTCCTCAACTCTCTCTGAGAGGGGAGACGTCATCCCACTTATCGATTACTTATAAGCACTGCTACCGACTTAGATCATGCGATTATTAGCATTTACCTCTTGCACTATTTTTGGCCTTCTCTCAATCCGCATTCAAGTAGAAAAAGCAAAGGGAATGATGTCTTCTGCGGCCTTCAAACTCATCTCCATGTGAGCTTTCTTGCCACTGTCAACTGTTTTTCAGTTTGACTTAACAAATCTGACTGATTTTATCCCCAACTCATAAAAACTGAACTTTCACTCTACAGTAACAGTCGTTTTTTGTTGGCCTCTTTATGGAAATTACCAAAAAAGGATACTTTGGCCATTTATGTTACTTTGATTAGGGGTGCTTATATTacttttacaaatacaaattagtGATaccatttgatttgatttgatttaaacagaaaaagtcTCCCTAAATGAACAGATATTTTGTGTTCATCTGCACTTTTCATTGTACTTTATAAGAATCCTATCAGTCATATGGTTGGAGTAAACATCTCTCTTCCATGCCA

Function

symbol description
fam175b BRISC complex subunit Abro1

NR:

description
PREDICTED: BRISC complex subunit Abro1 isoform X1

GO: NA

KEGG:

id description
K20799 FAM175B, ABRO1; BRISC complex subunit Abro1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934349.2 True 2086 mRNA 0.47 9 19001132 19012954
XM_026934350.2 False 2083 mRNA 0.47 9 19001132 19012954

Neighbor

gene id symbol gene type direction distance location
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 67337 18931562 ~ 18933795 (-)
LOC113538579 LOC108270446 coding downstream 69775 18918532 ~ 18931357 (-)
pomt2 pomt2,LOC107594797 coding downstream 83905 18902222 ~ 18917227 (-)
lin52 lin52,LOC107594798 coding downstream 100260 18888165 ~ 18900872 (-)
vsx2 vsx2,LOC107697755 coding downstream 119807 18872352 ~ 18881325 (-)
fank1 fank1,LOC108436747 coding upstream 340909 19353863 ~ 19364239 (-)
klf11b LOC108270275 coding upstream 376017 19388971 ~ 19392182 (-)
grhl1 grhl1,LOC108269933 coding upstream 394763 19407717 ~ 19421925 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 485794 19498748 ~ 19524868 (-)
LOC113538672 LOC108269607 coding upstream 515713 19528667 ~ 19583250 (-)
G167883 NA non-coding downstream 198439 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 404246 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 429239 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 436753 18563971 ~ 18564379 (-)
G167684 NA non-coding downstream 542338 18458455 ~ 18458794 (-)
LOC113538783 NA non-coding upstream 267324 19280278 ~ 19285841 (-)
G168304 NA non-coding upstream 306884 19319838 ~ 19426679 (-)
LOC113538592 NA non-coding upstream 428135 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 481109 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 573388 19586342 ~ 19586548 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 34519 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 153436 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 358243 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 618677 18375403 ~ 18382455 (-)
G167566 apob other downstream 684925 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 573970 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 576414 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 587176 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 1000625 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 1285557 20298511 ~ 20301554 (-)

Expression


Co-expression Network