mta1 (mta1,LOC107679789,LOC107666257)


Basic Information

Item Value
gene id mta1
gene name mta1,LOC107679789,LOC107666257
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16776703 ~ 16811216 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934426.2
CACTTCCGGTTTCTCAGGCGTGTCCCAATTGCACGCGCTGTTCCTCAGACGCCCTTAATTAACCCCTTCGCTGGAgaagagcttaaaaaaaaaaataagtgtacTGTCTCTTTAAGATCGCTGACTGCTCCACTTCGTATTGATCCAGCCACCATTTTCCAGCGCGCTGAGCGGCGGCAGTGGCAGCGACGGCGGCAACACACAGCCCTTACCTGGAGACACCAGGAGCAGGGGGCAGTCATGGCAGCCAATATGTACCGGGTTGGAGATTATGTTTACTTTGAAAACTCCTCCAGTAACCCACTGCTCATCAGGAGAATAGAGGAGCTCAACAAGACGGCGAATGGGAACGTGGAGGCCAAAGTGGTGTGTTTCTACAGACGCAGAGACATCTCCGCCACACTTGTCGCCCTAGCAGACAAACATGCACgagagctggaggaggagatggagaacCCTGAGATGGTGGACCTGccagagaaacaaaaacaccagctgagacacagagagctCTTCCTCTCCAGACAATTGGAGTCTCTGCCTGCTACACACATCAGaggaaagtgctgtgTGACTCTTCTCAATGAGACAGAAGCCCTCAAGTCCTACCTAGACCGAGAGGACGCATTTTTCTACTCTCTGGTGTACGACCCTCAGCAGAAAACACTCTTGGCTGATAAAGGCGAGATCAGAGTGGGGAATAAGTACCAGGCAGAAATCACCGACCTCCTCAACGAGGGAGAGGAGGATGGCAGGGAGCTGGCCAAACTAGAGGAGAAAGTGTGGGATCCCAACAGTCCTCTTACAGAGAAACAGATCGACCAGTTTCTTGTAGTGGCTCGGTCTGTGGGTACGTTTGCGCGGGCTTTGGACTGCAGCAGTTCAGTTCGGCAGCCCAGTCTACACATGAGTGCTGCAGCTGCCTCCAGAGACATCACACTGTTCCATGCCATGGACACGCTGCACAACAACGGCTATGACATGACACGAGCAATTGCTGCTTTGGTGCCTCAGGGTGGCCCTGTACTCTGTCGAGATGAGATGGAAGAGTGGAGCGCCTCGGAGGCCAACTTGTTTGAGGAGGCACTGGAGAAATATGGCAAAGACTTTACCGATATCCAGCAGGATTTTcTTCCTTGGAAATCTCTGACTAGCATAATTGAGTATTACTACATGTGGAAAACCACAGACAGATACGTTCAGCAGAAAAGGTTAAAAGCAGCGGAAGCAGAGAGCAAGCTGAAGCAGGTCTATATTCCTAACTACAACAAGCCCAATCCAAACCAGTTGAGTGTGAACAGCGTGAAGCCAGGGTTGGTGAACGGGGCTGGGGCAATACCTGGGGCAGTGAGTCAGCCAGCAGGACTGGGCCGCGCATGCGAGAGCTGCTACACCACCAGTTCCTATCAGTGGTACTCATGGGGGCCTACCAACATGCAGTGCAGACTGTGTGCGTCCTGCTGGACCTACTGGAAGAAGTACGGTGGCCTGAAGATGCCCACGAGACTGGATGGAGAACGGCCTGGACCTAACCGCAACAACATGAGTCCTCATGGTGCACCAGTGAGACACGGTGGGAGTCCAAAGTTTGCAGTGAAGACCAGACAAGCGTTCTACCTGCAGACCACTCAGCTGACAAGGACAGCAAGGCGTATCTGCCAAGATCTGCTCAAGTCCCGCTTTCTGGCTCGTCACCCCTACACACCCGTCAACACAGCAGCCATCAAAGCAGAGTGTGCAGTGCGGTTGCCAGATATGTCCAAAAAGCCCATATCTTTGAGGCATGCTGTCCGGAAGCCTCTGGAGTCTGTGGTTAGATATCTGGAGGCCCACCCATGCCCACCTAAAGCAGAGCCCCCACGAGGAGCCTCCATATCCACAGGTAGCTTGACTCCCATCAAGTCCTCCCCCATCCTGAACAACGGCTCACCCACCATCCTCGGCAAACGCACCTATGAGCAGCACAATGGCCTAGAcgGGTCCAAGTCTAAAGTGCTGGGTCCTCAGTGGGACATCATGTCCAAGCGAATGTCTGAGCAGGGACGTCCCCCCTCTGCCATGCAGGACAATGAAGTACATGAACTTGACTGACCCCTTCTGTGACCTCTGCCCTTTAGTACGGACAACAGGTAAACGGAGAGGTGTTTTTCCAATTCTCAGTGGTGGAAAAATCTCGGGGAGGATCTGTGGTCAACATTGCGCTATATTAGAGCCAGTGTTTTTGTTCAGGTTTATGGGCTAGAACAGGCACTGACCTGACTGTATAGGACTGCATTCAATATTTACCATATATTGctaattctgtttattattattattattattattattattattagttcaagtcttgttattcttttttttaaccaaatgtaATCGTTTGTTTTTAGTTAAATGATGAAACTTGTTTCTTGAAACAGCTTGCTCACAAGTCTGAGGGGGGGAAACATGGACTGTCTTATTGGCCTGttgcattattttctttgtcagctactcagaaagagagacaggcatTTCTTTCAGACTGCCCTTTTCATTCTGCTTGTCTTTGTTTCAATGCTCGTATTATTCGGTTTCTTCAGTTCACCCTGCCCTGACGCCACAGGCAATTAACTTATTGATTAAGATGACTGAATGTGTTCTTTTTCTACCTTTTTCACAAGTATTGCATCTATGCTTCTATGGTGTAATTAAAAAAGTTGTTTCTCTTTTGTGAATATGTAAATGAGAACCGTATGGAGGCATTATTGTACAGTGGTGCATTTTGCGCCTCCGGTGTTTATCAAGGCTTGTTATAAGGAATTTGCCATGTACAGCATATTCTTTTTGTAAGGAAACTCTCTTGGAAGTCTAAAACGATACTGCTCCATGAATACAGTGCAACTTCTTAAGAATGATACCATATATGTGTTGTACATGTTgtgcagatttgtttttttttccatcctctCACATATCCTGCCAAGAACAGCATTCTGAACCAGGCAGCTTTTCACCTGGTGATATGTGATACATTGAAGTTTACACCACAGTTGGCTCATTAAATATTGATACCTCGAGA

Function

symbol description
mta1 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone deacetylation; negative regulation of transcription by RNA polymerase II; and response to ionizing radiation. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA1 (metastasis associated 1).

NR:

description
metastasis-associated protein MTA1-like

GO: NA

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934426.2 True 3061 mRNA 0.48 19 16776703 16811216

Neighbor

gene id symbol gene type direction distance location
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding downstream 1127 16761588 ~ 16775576 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding downstream 119333 16626955 ~ 16657370 (-)
slc25a21 slc25a21,LOC107679800 coding downstream 156302 16540840 ~ 16620401 (-)
nkx2.9 nkx2-8 coding downstream 261523 16513235 ~ 16515180 (-)
nkx2.1 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 268188 16505893 ~ 16508515 (-)
tmem62 tmem62,LOC103132791 coding upstream 96506 16907722 ~ 16922047 (-)
hadhab hadha,LOC100304971,LOC103035446,LOC108425650,LOC102203549,LOC107594700,LOC102787580,LOC107752738 coding upstream 117629 16928845 ~ 16937439 (-)
slc30a1b LOC108269644,LOC105895753 coding upstream 129411 16940627 ~ 16953297 (-)
impg1b LOC108270397 coding upstream 324262 17135478 ~ 17155642 (-)
iah1 iah1 coding upstream 883564 17694780 ~ 17699650 (-)
G166865 NA non-coding downstream 31881 16744606 ~ 16744822 (-)
G166633 NA non-coding downstream 330698 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 509188 16267229 ~ 16267515 (-)
G166390 NA non-coding downstream 776191 16000219 ~ 16000512 (-)
G166380 NA non-coding downstream 843266 15933157 ~ 15933437 (-)
LOC113538645 NA non-coding upstream 27865 16839081 ~ 16865427 (-)
G166967 NA non-coding upstream 114060 16925276 ~ 16928196 (-)
G167011 NA non-coding upstream 156240 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 241268 17052484 ~ 17055548 (-)
LOC117598293 NA non-coding upstream 265766 17076982 ~ 17088776 (-)
eml5 eml5,LOC108435760 other downstream 1013985 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 1113208 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1454652 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1659339 15107120 ~ 15117364 (-)
nenf nenf other downstream 1694498 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 62063 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 355652 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 804522 17615738 ~ 17624534 (-)
G167566 apob other upstream 1494527 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1564187 18375403 ~ 18382455 (-)

Expression


Co-expression Network