grhl1 (grhl1,LOC108269933)


Basic Information

Item Value
gene id grhl1
gene name grhl1,LOC108269933
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19407717 ~ 19421925 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934434.2
TTTTGAGTATATCCCAAAAAGCAAGAAAAGCTAACAAAACCCGTTCTCTCGCCGACAGCCGCAACCGTAACCCTCATTCTCTCGTTCCTCTGCTGGAAGAAGACGGGTCGGATATACAGTACCAACTAGAAAGTCCAGTCCGACCAAAACGAGATGTCACAGGAGCATGacaaTAAGCGAGCAGTGCTGGTGCTACAGAATGATCCAGCCTACAGCCGTCGTGGCTTCACCAGTGAAGATGAAGCATGGAAGTCCTTCCTGGAGAACCCTCTTACAGCTGCCACCAAGGCCATGATGAGCATTAATGGAGATGAGGACAGTGCTGCTGCTCTAGGCCTCCTTTATGACTATTACAAGGTGCCACGGGAAAAGAGGACAATATCCCAGCCAAAGACCGACATCCTAGGCTCTGATGTGGATCCCAACAAAAGCAGGAACCTCATGGCTCCTCTCCCAGAGGCCTCAATGACATCGGCGGAGAGCAGGATTCAGGTTCTGAAGGGAGTCCCACTGAACATCGTGCTCCCTGGGAACCAGCTGGTGCAGGACAAGAGAGCGCTGTTCCCCTCACCCGACACCACAGTCACTGTGTCCATCGCTGCTATGCCCAATTACCCTGTAAAGACTGAGGAGCCATCGCATGCTTTCTCCGTCACCGTGCCCAACCCGCACTGCTCAGAGCCTGAGGGTCATGCAGTTGCATTCGAGCGTCAGCTCGCCCACAGTCAGTTCAGCCCCAACACACAGCCCCGTACACCAGATTCTACCTTCCCTGAGACCTTCAAGGATGGGGGTCAGGAGGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGGATGGCCTCCATTGCACAAGAGGACTATCCCGCCTTCGACACCGTGTCAGGTAATAATTTTGAGTACACACTGGAAGCTTCAAAGTCCCTCCGGCAGAAGTCAGGTGACGGCACAATGACATACCTCAATAAGGGCCAGTTCTACCCTATCACTCTAAAGGAAACAGACAACAGCAAAGTCCTTCACCACCCAATCTGCAAAGTCAGGAGTGTTGTGATGGTAGTTTTCGGTGAAGAGAAATGCAGGGATGACCAGCTCAAGCATTGGAAGTATTGGCACTCCAGACAGCACACGGCCAAACAGAGATGCATCGACATTGCTGACTACAAAGAAAGCTTTAATACCATCAGCAACATCGAGGAGATCTCCTACAATGCTATCTCCTTCACATGGGACATCAATGAGGAGGCAAAGATCTTCATCTCAGTCAACTGCCTGAGCACAGACTTTTCCTCTCAGAAGGGTGTGAAGGGTCTCCCGCTGAACCTGCAGATTGACACGTACAGCTACAACAACCGCAGCAACAAGCCTATTCACCGTGCCTACTGCCAGATCAAAGTGTTCTGTGACAAAGGTGCAGAGAGGAAAATCCGCGATGAGGAGCGCAAGCAGTCACGCAGGAAGGGCAAATGTGCTGAAGTGAACCCCAACTTGGCTCCCTTTGTGGATGCCAAAATGCCTCTGATGCACAAGCGTGGTGATATCACTGTGTTTAAGATGATGGCAGACCTGGAAACTCAGCCCGTCCTCTTCATCCCAGACATTCACTTTGCAAATTTCCAGCGCCATCCATTCTCTCCTGAGGATGCAGAAGATGGCTCAGGAATGAAAAGATTACCCTACTCAGAAGACGAGTTTGGATCTCCTCCTAATAAGTTGGCCAGGGTGGATGAACCAAAGAGAGTTTTGCTGTATGTGCGGAAAGAAAGTGAGGAGGTCTTCGATGCCCTCATGCTGAAGACTCCCACACTGAAAGGACTAGTGGAAGCGATTTCAGAAAAGTATGAGGTTCCGCTTGAGAAACTGGGGAAGGTCTACAAGAAGTGCAAAAAAGGGATCCTGGTCAACATGGACGATAATATTATCAAGCATTACTCCAATGAGGACACCTTTCAGATCCAGATGGAGGAGATGGGTGGAATAGTGAAGCTCACTCTCACTGAGATTTGA
>XM_026934435.2
TTTTGAGTATATCCCAAAAAGCAAGAAAAGCTAACAAAACCCGTTCTCTCGCCGACAGCCGCAACCGTAACCCTCATTCTCTCGTTCCTCTGCTGGAAGAAGACGGGTCGGATATACAGTACCAACTAGAAAGTCCAGTCCGACCAAAACGAGATGTCACAGGAGCATGacaaTAAGCGAGCAGTGCTGGTGCTACAGAATGATCCAGCCTACAGCCGTCGTGGCTTCACCAGTGAAGATGAAGCATGGAAGTCCTTCCTGGAGAACCCTCTTACAGCTGCCACCAAGGCCATGATGAGCATTAATGGAGATGAGGACAGTGCTGCTGCTCTAGGCCTCCTTTATGACTATTACAAGGTGCCACGGGAAAAGAGGACAATATCCCAGCCAAAGACCGACATCCTAGGCTCTGATGTGGATCCCAACAAAAGGAACCTCATGGCTCCTCTCCCAGAGGCCTCAATGACATCGGCGGAGAGCAGGATTCAGGTTCTGAAGGGAGTCCCACTGAACATCGTGCTCCCTGGGAACCAGCTGGTGCAGGACAAGAGAGCGCTGTTCCCCTCACCCGACACCACAGTCACTGTGTCCATCGCTGCTATGCCCAATTACCCTGTAAAGACTGAGGAGCCATCGCATGCTTTCTCCGTCACCGTGCCCAACCCGCACTGCTCAGAGCCTGAGGGTCATGCAGTTGCATTCGAGCGTCAGCTCGCCCACAGTCAGTTCAGCCCCAACACACAGCCCCGTACACCAGATTCTACCTTCCCTGAGACCTTCAAGGATGGGGGTCAGGAGGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGGATGGCCTCCATTGCACAAGAGGACTATCCCGCCTTCGACACCGTGTCAGGTAATAATTTTGAGTACACACTGGAAGCTTCAAAGTCCCTCCGGCAGAAGTCAGGTGACGGCACAATGACATACCTCAATAAGGGCCAGTTCTACCCTATCACTCTAAAGGAAACAGACAACAGCAAAGTCCTTCACCACCCAATCTGCAAAGTCAGGAGTGTTGTGATGGTAGTTTTCGGTGAAGAGAAATGCAGGGATGACCAGCTCAAGCATTGGAAGTATTGGCACTCCAGACAGCACACGGCCAAACAGAGATGCATCGACATTGCTGACTACAAAGAAAGCTTTAATACCATCAGCAACATCGAGGAGATCTCCTACAATGCTATCTCCTTCACATGGGACATCAATGAGGAGGCAAAGATCTTCATCTCAGTCAACTGCCTGAGCACAGACTTTTCCTCTCAGAAGGGTGTGAAGGGTCTCCCGCTGAACCTGCAGATTGACACGTACAGCTACAACAACCGCAGCAACAAGCCTATTCACCGTGCCTACTGCCAGATCAAAGTGTTCTGTGACAAAGGTGCAGAGAGGAAAATCCGCGATGAGGAGCGCAAGCAGTCACGCAGGAAGGGCAAATGTGCTGAAGTGAACCCCAACTTGGCTCCCTTTGTGGATGCCAAAATGCCTCTGATGCACAAGCGTGGTGATATCACTGTGTTTAAGATGATGGCAGACCTGGAAACTCAGCCCGTCCTCTTCATCCCAGACATTCACTTTGCAAATTTCCAGCGCCATCCATTCTCTCCTGAGGATGCAGAAGATGGCTCAGGAATGAAAAGATTACCCTACTCAGAAGACGAGTTTGGATCTCCTCCTAATAAGTTGGCCAGGGTGGATGAACCAAAGAGAGTTTTGCTGTATGTGCGGAAAGAAAGTGAGGAGGTCTTCGATGCCCTCATGCTGAAGACTCCCACACTGAAAGGACTAGTGGAAGCGATTTCAGAAAAGTATGAGGTTCCGCTTGAGAAACTGGGGAAGGTCTACAAGAAGTGCAAAAAAGGGATCCTGGTCAACATGGACGATAATATTATCAAGCATTACTCCAATGAGGACACCTTTCAGATCCAGATGGAGGAGATGGGTGGAATAGTGAAGCTCACTCTCACTGAGATTTGA
>XM_034308261.1
gtgtgcagtgaataGCTGAGGTCCGTTACAGGACGCTACTCATTTGGAGCAGCTGTCAGGAGAACCGCTTCGTCCGGACTGAAATTAAGCGAGCAGTGCTGGTGCTACAGAATGATCCAGCCTACAGCCGTCGTGGCTTCACCAGTGAAGATGAAGCATGGAAGTCCTTCCTGGAGAACCCTCTTACAGCTGCCACCAAGGCCATGATGAGCATTAATGGAGATGAGGACAGTGCTGCTGCTCTAGGCCTCCTTTATGACTATTACAAGGTGCCACGGGAAAAGAGGACAATATCCCAGCCAAAGACCGACATCCTAGGCTCTGATGTGGATCCCAACAAAAGCAGGAACCTCATGGCTCCTCTCCCAGAGGCCTCAATGACATCGGCGGAGAGCAGGATTCAGGTTCTGAAGGGAGTCCCACTGAACATCGTGCTCCCTGGGAACCAGCTGGTGCAGGACAAGAGAGCGCTGTTCCCCTCACCCGACACCACAGTCACTGTGTCCATCGCTGCTATGCCCAATTACCCTGTAAAGACTGAGGAGCCATCGCATGCTTTCTCCGTCACCGTGCCCAACCCGCACTGCTCAGAGCCTGAGGGTCATGCAGTTGCATTCGAGCGTCAGCTCGCCCACAGTCAGTTCAGCCCCAACACACAGCCCCGTACACCAGATTCTACCTTCCCTGAGACCTTCAAGGATGGGGGTCAGGAGGTGTTCTCGTTCCCAGGGGATCTCCAGTTACGGATGGCCTCCATTGCACAAGAGGACTATCCCGCCTTCGACACCGTGTCAGGTAATAATTTTGAGTACACACTGGAAGCTTCAAAGTCCCTCCGGCAGAAGTCAGGTGACGGCACAATGACATACCTCAATAAGGGCCAGTTCTACCCTATCACTCTAAAGGAAACAGACAACAGCAAAGTCCTTCACCACCCAATCTGCAAAGTCAGGAGTGTTGTGATGGTAGTTTTCGGTGAAGAGAAATGCAGGGATGACCAGCTCAAGCATTGGAAGTATTGGCACTCCAGACAGCACACGGCCAAACAGAGATGCATCGACATTGCTGACTACAAAGAAAGCTTTAATACCATCAGCAACATCGAGGAGATCTCCTACAATGCTATCTCCTTCACATGGGACATCAATGAGGAGGCAAAGATCTTCATCTCAGTCAACTGCCTGAGCACAGACTTTTCCTCTCAGAAGGGTGTGAAGGGTCTCCCGCTGAACCTGCAGATTGACACGTACAGCTACAACAACCGCAGCAACAAGCCTATTCACCGTGCCTACTGCCAGATCAAAGTGTTCTGTGACAAAGGTGCAGAGAGGAAAATCCGCGATGAGGAGCGCAAGCAGTCACGCAGGAAGGGCAAATGTGCTGAAGTGAACCCCAACTTGGCTCCCTTTGTGGATGCCAAAATGCCTCTGATGCACAAGCGTGGTGATATCACTGTGTTTAAGATGATGGCAGACCTGGAAACTCAGCCCGTCCTCTTCATCCCAGACATTCACTTTGCAAATTTCCAGCGCCATCCATTCTCTCCTGAGGATGCAGAAGATGGCTCAGGAATGAAAAGATTACCCTACTCAGAAGACGAGTTTGGATCTCCTCCTAATAAGTTGGCCAGGGTGGATGAACCAAAGAGAGTTTTGCTGTATGTGCGGAAAGAAAGTGAGGAGGTCTTCGATGCCCTCATGCTGAAGACTCCCACACTGAAAGGACTAGTGGAAGCGATTTCAGAAAAGTATGAGGTTCCGCTTGAGAAACTGGGGAAGGTCTACAAGAAGTGCAAAAAAGGGATCCTGGTCAACATGGACGATAATATTATCAAGCATTACTCCAATGAGGACACCTTTCAGATCCAGATGGAGGAGATGGGTGGAATAGTGAAGCTCACTCTCACTGAGATTTGA

Function

symbol description
grhl1 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including desmosome organization; epiboly; and inner ear development. Located in cytoplasm. Is expressed in several structures, including epidermal cell; head; integument; pronephric duct; and sensory system. Orthologous to human GRHL1 (grainyhead like transcription factor 1).

NR:

description
PREDICTED: grainyhead-like protein 1 homolog

GO:

id name namespace
GO:0003334 keratinocyte development biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934434.2 True 2004 mRNA 0.50 15 19407717 19421925
XM_026934435.2 False 2001 mRNA 0.50 15 19407717 19421925
XM_034308261.1 False 1916 mRNA 0.51 15 19407717 19421730

Neighbor

gene id symbol gene type direction distance location
klf11b LOC108270275 coding downstream 15535 19388971 ~ 19392182 (-)
fank1 fank1,LOC108436747 coding downstream 43478 19353863 ~ 19364239 (-)
abraxas2 fam175b coding downstream 394763 19001132 ~ 19012954 (-)
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 473922 18931562 ~ 18933795 (-)
LOC113538579 LOC108270446 coding downstream 476360 18918532 ~ 18931357 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 76823 19498748 ~ 19524868 (-)
LOC113538672 LOC108269607 coding upstream 106742 19528667 ~ 19583250 (-)
LOC113538986 LOC108269623,LOC108430634 coding upstream 207309 19629234 ~ 19643615 (-)
LOC113538599 inafm2 coding upstream 350875 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 418446 19840371 ~ 19867165 (-)
LOC113538783 NA non-coding downstream 121876 19280278 ~ 19285841 (-)
G167883 NA non-coding downstream 605024 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 810831 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 835824 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 843338 18563971 ~ 18564379 (-)
LOC113538592 NA non-coding upstream 19164 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 72138 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 164417 19586342 ~ 19586548 (-)
G168405 NA non-coding upstream 176443 19598368 ~ 19598898 (-)
LOC117598328 NA non-coding upstream 257572 19679497 ~ 19680669 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 441104 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 560021 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 764828 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 1025262 18375403 ~ 18382455 (-)
G167566 apob other downstream 1091510 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 164999 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 167443 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 178205 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 591654 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 876586 20298511 ~ 20301554 (-)

Expression


Co-expression Network