klf11b (LOC108270275)


Basic Information

Item Value
gene id klf11b
gene name LOC108270275
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19388971 ~ 19392182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934442.2
TTACTCAGCTGAGGCGAGAGCTGAGTGGTAAAAGCGAATTGAATTCCGGTCTCAGTCGTCACTACACGGGCGTTAGTAGCACGGACTCCTTTGTtctgtgaagtgttttttttcaaaaaaataaatatatatatatatacattttgaagACATGTCAACGCGACTATTTCCGAATATGGACGCATTATCTCAGGGAGCTCAGATGGACATTCACAGACCGTATATGGAAAGGAGGAGGCACGACAGTGAGCAGTCGTTATGCAGCGTGCCAGAGTCCAACGATCTGGAGGCGGCCGAAGCGCTCGTCTGCATGAGCTCCTGGTTTCAGTCCTCCCAAAGACCCGGCAGCCTGAAACCTCGTCCTCTGACCCCGGCCTCTGACTCCTGCGACTCCCTCCTGCATCCCGAATCCCCAGAGACCCCTGGAGACTTTGTTTCGCTCTCATCGTTGTGTATGACGCCACCTCACAGCCCCAGTTTTGCTGAGACCACGGCCCACATCCCAGTGCCCACCTCACCCTGCCCTCTGAAAAATCCTTGCACCAGCGTCCTCAGTCCCAGACTCCAGCAACCTGCTGTGACCTCCTGTGCTGAGACGTCACCTCCCAGGTGGCTTCCCACAACTGAGAATTCTTCCTCCCAGCCCTGCAGAGCCATGGCTACCAGCGTCATCCGACACACAGCTGACAGTTCAGTCTACCAGAACATTCCACACGCTGTCCAACGTCAACAATCAGCCCCGACACACATTCAGCCGCCAAAACAGCCAGCACAGCCAGAggttcccttaccagcctcttcACCCTGCCAGTCCCACACATCCAGCACTGCATCAGAAACATGTCCGAACAGCAGCAACCAATCCACCAGTGACAAGATCCCTTCCAAATCTTCTTCCAATTCGCCACTTTCCACAGCCAGTCCACCCATCATATGCCAGATGTTCCCAGTGGCACAACCAGGACTTATTTCAGCAGCGTTTATTCAGAGTCCAGCTCCAAAGTCTATCCTGCCACAGCCAATTTTTGTTGGTTCTTCAGTTCCACAAGGTACTGTGATGCTGGTGATGCCTCGGGCATCAGTGGGTCAGACACCCCAGTGCCCACAGCAGGCGGTTGTGACCGTCGGCAACACCAAACTGCTGCCTCTGGCACCAGCACCTATCTACCTACCCTCAGGGCAGAGTGGCACCACGCAGTCAGAGTTCTCCCGTAGGCGCAACTATGTCTGCAGCTTCCCTGGCTGCAGGAAGACCTATTTCAAGAGCTCTCACCTCAAGGCACACCTTAGAACTCACACAGGCGAGAAGCCATTCAGCTGTAACTGGGAGGGCTGTGACAAAAAATTTGCACGCTCTGATGAGCTCTCCCGTCACCGGCGAACACACACTGGCGAGAAAAAGTTCGTCTGTCCTGTTTGCGACAGACGCTTCATGCGCAGTGACCACCTTACTAAGCATGCTCGCCGTCACATGACCACCAAGAAGATCCCCTCCTGGCAAACAGAGGTTCGAAATCTCAACAAGATAACAACAGCCAAGGCTCTGCCAATCAGCATGCTGTTACCGGCCTCAAACTGAATCTGACTGGAGCAAACTACTTCAGTCATACAGAGACTCTTTATTGGAACGATAAGGCTGCTAATTCTCGTGGACATGCACTGGACTCTCTCTTGTTTTCCATTCTGCTCATTTTGTACACTTTGCAATGAACGCAATGTTTTGTTTACTCACTTGTTATAATCATTCATGCACTCTATTTTTTGCCAAAGTCTTCGTACTATGTTTGTCTTaattatatgtgtatgtataattaCAATTGCATTCTGTTGGAAATAAATGGCCTATTCCTTACTGCCTCAAGGATCTACTTATGGATAATTATCTGAACTGCTCTAAtgaaatcattttcttttatttaataccCATTTTCAGTAAACAGTGATAAATCAGTA

Function

NR:

description
PREDICTED: Krueppel-like factor 11

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09209 KLF10_11, TIEG; krueppel-like factor 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934442.2 True 1953 mRNA 0.50 4 19388971 19392182

Neighbor

gene id symbol gene type direction distance location
fank1 fank1,LOC108436747 coding downstream 24732 19353863 ~ 19364239 (-)
abraxas2 fam175b coding downstream 376017 19001132 ~ 19012954 (-)
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 455176 18931562 ~ 18933795 (-)
LOC113538579 LOC108270446 coding downstream 457614 18918532 ~ 18931357 (-)
pomt2 pomt2,LOC107594797 coding downstream 471744 18902222 ~ 18917227 (-)
grhl1 grhl1,LOC108269933 coding upstream 15535 19407717 ~ 19421925 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 106566 19498748 ~ 19524868 (-)
LOC113538672 LOC108269607 coding upstream 136485 19528667 ~ 19583250 (-)
LOC113538986 LOC108269623,LOC108430634 coding upstream 237052 19629234 ~ 19643615 (-)
LOC113538599 inafm2 coding upstream 380618 19772800 ~ 19775087 (-)
LOC113538783 NA non-coding downstream 103130 19280278 ~ 19285841 (-)
G167883 NA non-coding downstream 586278 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 792085 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 817078 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 824592 18563971 ~ 18564379 (-)
LOC113538592 NA non-coding upstream 48907 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 101881 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 194160 19586342 ~ 19586548 (-)
G168405 NA non-coding upstream 206186 19598368 ~ 19598898 (-)
LOC117598328 NA non-coding upstream 287315 19679497 ~ 19680669 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 422358 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 541275 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 746082 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 1006516 18375403 ~ 18382455 (-)
G167566 apob other downstream 1072764 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 194742 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 197186 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 207948 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 621397 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 906329 20298511 ~ 20301554 (-)

Expression


Co-expression Network