yy1a (yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103)


Basic Information

Item Value
gene id yy1a
gene name yy1a,LOC100304682,LOC108425622,LOC103039658,LOC107674084,LOC107594811,LOC107733162,LOC108258103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18399711 ~ 18403969 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934450.2
GTGTGGTAAGGAAGGGGCAGAGGCGACGGAGAGGCAGAGTGCAAGAGCGTGAAGCTACTCGACAGCCAATTGGTCCCGTTTGGACGAAAAACAATCCGGAATGGCGTCTGGAGAGACACTGTACATAGAAACGGACGGCTCGGAGATGCCGGCGGAGATCGTGGAGCTGCATGAAATCGAGGTGGAGACCATCGAGACCACGGTGGTCGGAGGAgacgacgacgacgacgacgaACATCAGTCCATGATCGCGCTGCAGCCGCTGGTGTCTGACGACCCGAATCACATCCACCACCAAGAGGTGATCTTAGTCCAGACCCGGGAGGAGGTGGTGGGATGCGATGACTCGGAACTGCACACAAACGACGGCTTTGAGGACCAGATTCTGATCCCGGTCCCTGTTCCAGCCGCGGAGGAAGAGTTTATCGAGCAGACTCTGGTGACTGTGTCTGGGAAAAACACGGGGCGCCTGAAGAAAGGAAGCGGCAAGAAAGTGGTTAAAAAAGGCTTTCTGGGCGCTACAGAGGCGAGCGGACGGAAATGGGAACAGAAGCAAGTGCAGATAAAAACGCTCGAAGGAGAATTTTCTGTTACTATGTGGGCATCGGATGATAAGAAGGACATTGATCACGAGACAGTAGTTGAGGAGCAGATCATCGGGGAGAACTCCCCTCCAGATTACTCAGAGTACATGACGGGCAAGAAGCTGCCACCTGGTGGAATCCCGGGCATTGACTTGTCCGACCCCAAACAGCTGGCAGAGTTTGCTAGGATGAAACCACGAAAAATGAAGGAAGATGATTCACCAAGAACAATAGCCTGCCCCCACAAAGGTTGCTCAAAAATGTTCAGAGACAACTCTGCAATGAGGAAGCATTTGCACACACACGGACCACGTGTCCACGTGTGCGCTGAATGTGGGAAAGCATTTGTTGAAAGTTCCAAACTCAAACGACATCAGTTGGTTCATACTGGCGAAAAGCCTTTCCAGtgCACATTTGAAGGCTGTGGAAAGCGTTTCTCTCTGGACTTCAACTTGCGCACACATGTGCGTATTCACACTGGAGACAGACCCTACGTGTGCCCGTTTGACGGCTGCAATAAGAAATTTGCCCAGTCCACCAACCTAAAGTCTCACATTTTGACACATGCTAAAGCTAAGAACAACCAGTGAATGGACTGGATCTGGAAAGACGTTTCAATAAGGACAGCAGCATTCAACgctttaaaaaaacaccctttgtgtgttgtttgtagAAGATTTTTTTGTAAGAGAGAGTATCTACTGATGTTTTATCAGAATGAGTATTTAACTGATGAACTGACACCCAACTAGCCCTTAGGACACTTCTTATGgtacaaactgaactgaaatttctTTACTACCAGAAAGTGTCTTCTTTTGAAGACGTGCGTTTCTGGACCTTCATCCACAACCCGAGATATTCTTTCTCCAGAACCCAAAGAGTCtaatttttctgtctgtgtatgttACCTGTCCGCAAAGAGACATGACTGCTTTTTTAGTTGTCTTCTAAGTGTGCATATTGTACACTTTTTAGACATTAGCTTTGTcttgaaatgttttttccccctgagaTTTGATATATGTGAATGCTCTTCTTCAAAAAGAAGGAGAtactattaaattttttttttccagtcatgAGGTATCCTCCAGTGGTATCTCATTTTGTATAACTgttctgtaaaaatattttgaaaatcatgtagataataGAGATGTTAGATTTCTGTTTAACCTATTAAAGgaattttattcaattaaaaattG

Function

symbol description
yy1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development; circulatory system development; and positive regulation of gene expression. Predicted to be part of PcG protein complex and transcription regulator complex. Is expressed in several structures, including eye; heart; myotome; notochord posterior region; and pronephros. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human YY1 (YY1 transcription factor).

NR:

description
PREDICTED: transcriptional repressor protein YY1-like

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09201 YY; transcription factor YY

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934450.2 True 1795 mRNA 0.46 5 18399711 18403969

Neighbor

gene id symbol gene type direction distance location
c10h1orf115 NA coding downstream 109236 18287763 ~ 18290475 (-)
alkal2b LOC108425626 coding downstream 150479 18243360 ~ 18249232 (-)
sh3yl1 sh3yl1,LOC107733179,LOC107674108,LOC107594817 coding downstream 169236 18191959 ~ 18230475 (-)
id2a id2,id2a,LOC107579075,LOC107707685,LOC107553286,LOC107655320,LOC106566577 coding downstream 472661 17924721 ~ 17927050 (-)
asap2a asap2 coding downstream 618659 17708618 ~ 17781052 (-)
evla LOC108425620,LOC108270303 coding upstream 11409 18415378 ~ 18437153 (-)
eml1 eml1 coding upstream 55503 18459472 ~ 18512607 (-)
pkdccb LOC108270133 coding upstream 115928 18519897 ~ 18525899 (-)
rpusd2 rpusd2,LOC103399345 coding upstream 147714 18551683 ~ 18556050 (-)
pcmtl pimt,pcmtl,LOC108425617,LOC105015970,LOC107392292,LOC107719513 coding upstream 152149 18556118 ~ 18563366 (-)
G167617 NA non-coding downstream 287 18399171 ~ 18399424 (-)
G167580 NA non-coding downstream 83012 18316478 ~ 18316699 (-)
G167579 NA non-coding downstream 96372 18302105 ~ 18303339 (-)
G167577 NA non-coding downstream 103156 18294983 ~ 18296555 (-)
G167572 NA non-coding downstream 127895 18271603 ~ 18271816 (-)
G167618 NA non-coding upstream 584 18404553 ~ 18404775 (-)
G167684 NA non-coding upstream 54486 18458455 ~ 18458794 (-)
G167783 NA non-coding upstream 160002 18563971 ~ 18564379 (-)
G167786 NA non-coding upstream 167534 18571503 ~ 18571893 (-)
G167802 NA non-coding upstream 192612 18596581 ~ 18596886 (-)
gdf7 LOC108270114 other downstream 17256 18375403 ~ 18382455 (-)
G167566 apob other downstream 83504 18305743 ~ 18316207 (-)
cmpk2 cmpk2 other downstream 775177 17615738 ~ 17624534 (-)
htr1b htr1e,LOC108269541 other downstream 1151888 17166868 ~ 17247823 (-)
mideasb elmsan1 other downstream 1500981 16873279 ~ 16898730 (-)
bahd1 bahd1,LOC108436768 other upstream 196326 18600295 ~ 18642889 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other upstream 435646 18839615 ~ 18847696 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other upstream 557739 18961708 ~ 18966613 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 1182955 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 1185399 19589368 ~ 19595214 (-)

Expression


Co-expression Network