LOC113538986 (LOC108269623,LOC108430634)


Basic Information

Item Value
gene id LOC113538986
gene name LOC108269623,LOC108430634
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19629234 ~ 19643615 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934500.2
ttgtgtccctgtggtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaggaggcgCTCTGCTAGCTGACAGCTGTGCGCGGCGGCAGAGCTAACCTGCTAGCTACCTATCCCCGAACAAAGGAGACAGTAGCCCTGCCGCCGAGCTGTAAGATGTCAGAAGGAATCACTGAAGGTTGTTCACTGGATGGTGTCTCATTTCCACTTTCTACCCTGTCTTGGTCTCTTTTGCTCTTCGTGAGTGTGCTGTCTACTACACAGGCATCAAGTTGTGTGAGGCCGTTCTCCATCCAACATGGCCGAGTAAATGTGACTGAGACAAACAGAGGCTCGTTCCCTGTGGGCACTGTGCTGCAGTACAGCTGTGATTCAGGCTACACTGTGGACGGACCCAGCATCATCGTCTGCACCAGAGAGGGCCTCTGGTCCTCGGGCCCACCACGCTGCCTCCACAATAACTACTGTGCCCCCCCATTAGAGCCAGAGAACGGGGGTTACACCTGCCACCCGTCTCCATGTCATCGTTTGACTCACGGCACAGTGGTGGAGTATTTCTGTGACGAGGGCTACACACTGAAAGGAGATTACAAATACCTCACCTGCCAGAAGGGAGAATGGAACGGTCCTACAGAGATCAGCTGTGTGCTCACTCAAGGTTGTGTGAGGCCGTTCTCCATCCAGCATGGCCGAGTAAATGTGACTGAGACAAACAGAGGCTCGTTCCCTGTGGGCACTGTGCTGCAGTACAGCTGTGATTCAGGCTACACTGTGGACGGACCCAGCATCGTCGTCTGTACCAGAGAGGGCCTCTGGTCCTCAGGCCCACCACGCTGCCTCCACAATAACTtgtgcagTCCTCCATTTGTGCCAAAGAACGGGGGTTACAACTGCCATCCTTCACCTTGCCATCGTCTCACCGATGGCATGGTGGTGGAGTATTTCTGTGAGGAGGGCTACACGCTGAAGGGAGATTACAAATATATTACCTGCCAGAACGGAGAATGGAACAGTCGCATGCAGATCAGCTGTGTGTTCAATCAAGAAAAACATGCAGCTCCTGTGCTGGGAATGAACACACTGTCCATTGTGGCCACCACAGCCAGTTCTGTGGCACTTGTCCTTCTCCTAATGGTGGTGCTCGTTTTACTGCAGCCCAGACTGAAGGCTTTTCATCATGGACGGCGTGAGCAGGGAGACTCTGGGCAGCCGGTGACCATCATGGTGGAGGGTGTGCAGGTTACCTTGCCATCCTATGAGGAGGCAGTGTCTGGAGCTGGAGGTGCAGTTTTGCCTCAGCTTCTACCCCAAACACAACTAGAGTCTATGGAGCATGTGTTAACCCAGACCTCAACAACACACGCTCAGCACACAGAGATCTCAGTGGTGCATCAGCCATCTTCCTCATCTTCCTTCTCATCCTCCTGGAGTTTAGATGGTGCACAGGGAGCAACAGCAGCATCCTCAGCATTTCAGTGTCAGAATCCAGACTCCAGTCAGCAAAACAGTTTACTGTCTCTACACGGCTCAGAACAGAACCTCGCTGATGACATTCCCTTATTAAAGGAATCCTGAGACTTTCTGTCACAGCCTCTGTTGTTGAGGCCACAAAGACTGCAGCCACACACGCCTGACTGCTATGATCTGACTTTCAGCTGAATCTCTGCAACACGTAACCCATCTCAGGTGATACTGAACTAGACCGACCTGATGCCCAGCGTGAGCCACCAGTTCTGTCCAGTCAAGAACttacaaattattttcacatgtattatacacacacacacacacacacacacacacacacactctcacactcagaTACGTCACAGCTTTTGATTCCTCTGTTTCCTTGGACATGTAGCAAAGACACGACACTGTACAGAGAGTACAAGTTTTATGAAAGGCCTTTAAAGGATTTAAATCTTATTTTGGTAGTAAACACATTGTTCTGAAATAGACAACAttcccccccccacacacacacacgcaaacacacaccacccacacaGCAATGTTATGAACAATGTTATGTACACCCATGGCACCACCTGACATTGTGATTGATGCATTCACACTTGTGCTAGCACTGAGtggttgtttgtttgcattttttttttttgtttgtttttaagattGGAGAATTTAAAGTGTCCTCACACTCATGGCAATTAAGTGGTTTCTGtggaaatgttattttaaaattttattgtgtACACCTTGCTACAGCATAACAAAGGGCTATTTCTACCCTCATAGTGGTTTTATCCCCCATTTATTCGTCACTGCcgagcattatttaaaaaagtaatctTCTTGTCTGATTAGCatgcattataaaaaaaaaatgactcttAAGATTAAGTAATAAGGCATGTGACTTAGTGTTTTAAGAAGCTTTAGAGTAGGATTGAGGTGGTTGGTGATGTATGGATTTTAAAACGCATGGATTTGCTCTGAAAGCATACAAAACACACTGGAGGCCCTGCAGTAGCACACTGATTCATCTATAAGTTAGCTATACATGCAGCGGGGCTCCATTTCCATAGGGATTGGCTGAATGTTATGTTCTCTCATAGCCTCTTAAAGCTTAAGCAAATGTGCTTGCTTTGACAGTATCACAggctttttcacattttttttgttgttaatgtGCATTGATGTGCattagtacatttttaaaaaaaaatgactttcagTATGAAGTGCTATtgattagcattttaaaattcatttttaaatatatgatgcAAGCAAGTTCCTAACTCTCCTTGCTTTAATGAAGATAATCCAGATATCTTTGCAGGAGCAAATGTTggataatttaatgtaaattgatttatttaataccAAACAAGTGAAGTCCTGTACTGTATAacatctgtttttcatttttggaacAGAATGAAGTTACTTGCCAGGcataggattttaaaaaaaaaataaatttaatttatctctgcattgtaaataattatttctGATTAAATATCATTTCACCTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934500.2 True 3015 mRNA 0.45 9 19629234 19643615

Neighbor

gene id symbol gene type direction distance location
LOC113538672 LOC108269607 coding downstream 45984 19528667 ~ 19583250 (-)
LOC113538555 LOC108269630,LOC108441822 coding downstream 104366 19498748 ~ 19524868 (-)
grhl1 grhl1,LOC108269933 coding downstream 207309 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 237052 19388971 ~ 19392182 (-)
fank1 fank1,LOC108436747 coding downstream 264995 19353863 ~ 19364239 (-)
LOC113538599 inafm2 coding upstream 129185 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 196756 19840371 ~ 19867165 (-)
bub1bb bub1b coding upstream 229807 19873422 ~ 19879335 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding upstream 247979 19891594 ~ 19908747 (-)
LOC113538610 pld4 coding upstream 375604 20019219 ~ 20025636 (-)
G168405 NA non-coding downstream 30336 19598368 ~ 19598898 (-)
G168399 NA non-coding downstream 42686 19586342 ~ 19586548 (-)
G168354 NA non-coding downstream 130546 19494063 ~ 19498688 (-)
LOC113538592 NA non-coding downstream 179506 19441089 ~ 19449728 (-)
G168304 NA non-coding downstream 202555 19319838 ~ 19426679 (-)
LOC117598328 NA non-coding upstream 35882 19679497 ~ 19680669 (-)
LOC117598314 NA non-coding upstream 39624 19683239 ~ 19684146 (-)
LOC113538910 NA non-coding upstream 43616 19687231 ~ 19688109 (-)
G168466 NA non-coding upstream 120231 19763846 ~ 19765727 (-)
G168493 NA non-coding upstream 123139 19766754 ~ 19766953 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 19456 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 34020 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 40332 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 662621 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 781538 18839615 ~ 18847696 (-)
srp14 srp14,LOC106610862 other upstream 369964 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 654896 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 679149 20322764 ~ 20330746 (-)
G169119 NA other upstream 921314 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 1170074 20813689 ~ 20817439 (-)

Expression


Co-expression Network