nkx2.9 (nkx2-8)


Basic Information

Item Value
gene id nkx2.9
gene name nkx2-8
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16513235 ~ 16515180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026934511.2
CGAGTCATTCAGGTGCTTTGTGGCCGAGTGGGGAGGCGGCTACTGTTTAGCTGCGCTAAGTGCTGTTTATATAAACAGCACCACGCCAGTGTACACACTTCATCACTTGGAGTCTGATCAAGCACCATCCTGCGGCTCGTCCTCGGATAAAGCTATTTAAGACAAACAAATTTAGGTTTGTTTTATCATGGCCGTTCCTGCCAGGCTCAGCTTCACCGTGAGGAGTATTTTGGATTTACCAGAAAATGACAGCGAGAGCACAGCGCATCTTCTGCcactccactctctctctggctctcctTACTCCTCCTGGGCAGACAGCGACAGAGGCCACTGCATGTCCTCAGATGAGAGCAATCCGGAGGCGTCCCCTGACTCCACCGGGTCTAATGATCCCCCCGCGGAGGCAGatcaggagaagaagaagaaacggCGTGTGTTGTTCTCCAAGGCCCAGACCTACGAGCTGGAGAGGCGCTTCCGGCAGCAGCGCTACCTGTCTGCTCAGGAGCGCGAGCAGCTCGCGCATCTCCTCCGCCTCACACCCACACAGGTCAAGATCTGGTTCCAGAACCACAGGTATAAGATGAAGCGAGCGCGGGTTGAGTGTGTGCAGGATTTCGGTCCTCCTCCGGTGCTGCGCAGGGTCGTAGTGCCCATTCTAGTGCGGGACGGTAAACCATATCAGAGCTGCATTGGCGAGAGCGAAAAGGGAGGCTGCGTGGTTCCTCCATCATCCTGTGGTCCTCGAGGGTTCCAGCCTTTTCAGCCATCAACTTTTTCGCTTCTACCGCAGTACCAGCACTTTACAAACCCAGCAGTCTCCACACACCATTTCATTTGGTGAGACCATCCACAGTGGACTAAGGATGACGCATGGATGAacacacatgcttttatttacacGTGTAGTGTACACAGTAACTGAGTAAATGCAATTtgcacatattttattttctatttagaaatagttgtgttttctgatctgacatgatttgtGAATTATTTGCAACGATTATGACACACAACTATAGTATAGTAAAGAGGGCtaattttgcttttgtttaaaaCCAAATGTATATACGGTagttaagaattttaaaatatatattttatataggcTGGACAAGACATGTTGCATAGataactggatttttttttttttttacacaaaaacgGGTTTCATTAATTTACAGCCTTAA

Function

symbol description
nkx2-8 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II and transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
homeobox protein Nkx-2.8

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09347 NKX2-8; homeobox protein Nkx-2.8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026934511.2 True 1202 mRNA 0.48 2 16513235 16515180

Neighbor

gene id symbol gene type direction distance location
nkx2.1 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 4720 16505893 ~ 16508515 (-)
mbip mbip coding downstream 22190 16479179 ~ 16491045 (-)
cdan1 cdan1,LOC107582945 coding downstream 92450 16409811 ~ 16420785 (-)
stard9 stard9,LOC107662650,LOC107679770,LOC107724018,LOC107730214,LOC107572014,LOC108270056 coding downstream 105093 16379857 ~ 16408142 (-)
sptb sptb,LOC108270244,LOC108425666,LOC107662651,LOC107582900,LOC107602260 coding downstream 147975 16337712 ~ 16365260 (-)
slc25a21 slc25a21,LOC107679800 coding upstream 25660 16540840 ~ 16620401 (-)
plekhh1 LOC108270359,LOC108425659,LOC107679799,LOC107752725,LOC107741858 coding upstream 111775 16626955 ~ 16657370 (-)
tmem229b tmem229b,LOC107752730,LOC107679790,LOC107594722,LOC107578043,LOC107666241,LOC107708331 coding upstream 246408 16761588 ~ 16775576 (-)
mta1 mta1,LOC107679789,LOC107666257 coding upstream 261523 16776703 ~ 16811216 (-)
tmem62 tmem62,LOC103132791 coding upstream 392542 16907722 ~ 16922047 (-)
G166633 NA non-coding downstream 67230 16444841 ~ 16446005 (-)
G166484 NA non-coding downstream 245720 16267229 ~ 16267515 (-)
G166390 NA non-coding downstream 512723 16000219 ~ 16000512 (-)
G166380 NA non-coding downstream 579798 15933157 ~ 15933437 (-)
G166319 NA non-coding downstream 616665 15895667 ~ 15896570 (-)
G166865 NA non-coding upstream 229426 16744606 ~ 16744822 (-)
LOC113538645 NA non-coding upstream 323901 16839081 ~ 16865427 (-)
G166967 NA non-coding upstream 410096 16925276 ~ 16928196 (-)
G167011 NA non-coding upstream 452276 16967456 ~ 16969965 (-)
G167007 NA non-coding upstream 537304 17052484 ~ 17055548 (-)
eml5 eml5,LOC108435760 other downstream 750517 15715560 ~ 15762718 (-)
ktn1 ktn1,LOC107668535 other downstream 849740 15633002 ~ 15663495 (-)
pgfb pgf,LOC108435746 other downstream 1191184 15303235 ~ 15322051 (-)
capn3a capn3,LOC108269768,LOC108435782 other downstream 1395871 15107120 ~ 15117364 (-)
nenf nenf other downstream 1431030 15079696 ~ 15082205 (-)
mideasb elmsan1 other upstream 358099 16873279 ~ 16898730 (-)
htr1b htr1e,LOC108269541 other upstream 651688 17166868 ~ 17247823 (-)
cmpk2 cmpk2 other upstream 1100558 17615738 ~ 17624534 (-)
G167566 apob other upstream 1790563 18305743 ~ 18316207 (-)
gdf7 LOC108270114 other upstream 1860223 18375403 ~ 18382455 (-)

Expression


Co-expression Network