LOC113530110 (cyp1c1,cyp1c3,LOC103357016,LOC107745367)


Basic Information

Item Value
gene id LOC113530110
gene name cyp1c1,cyp1c3,LOC103357016,LOC107745367
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20369134 ~ 20372103 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307745.1
TCCAGCTCGGACAGAGTAACTTTCAGTGCCTAGAAATCAGAACACAAGGCATATTCATGATATTGTCTTGAATATTGGCAAGATATCTGAGACTGAACCATCTGAACATACAGAAACTCAGTTcacttgaacttttttttttcactgagaAAGGGAAAAAGGAGAAAGATTTCATCCATTAATTGGAACTTTACAGCAGAATCAAGAGATGGCATTATCAGAGAGCGAGTTTGGCATGAAGGGAAGCAGCATTATAAGGGAATGGAGTGGACAAGTCCAACCAGCGCTCatcatttccttcattttccTCTTCTGCCTGGAGGCCTGTCTGTGGATCCGCAACCTTGCTCTCAAGAAAAGGCTGCCAGGGCCCTTTGCATGGCCACTAGTGGGCAACGCCATGCAGCTAGGCCAAATGCCCCACATTACCTTCTCCAGGCTTGCAAAGAAGTATGGCAATGTCTACCAGATCCGACTGGGCTCCAATGACATAGTGGTGCTGAATGGACACACAGCCATACGACAAGCTCTCATACAACATAGCACAGAGTTTGCAGGAAGACCAAACTTCATCTCCTTTCAAATTATATCTGGAGGGAAAAGTATGACATTCGGCAGTTACAGCGAACAGTGGAAGGCACACCGGAGAGTAGCTCAATCTACCTTGAGGGCTTTCTCATCTGCAAACAGCCAGACCAAGAAGGCCTTTGAACAACATATTGTGGCAGAGGCCATGGATATGGTTCAGAACTTTCTCAGGCTGAGTGCAGATAGATGTTATTTCAACCCATCACATGAATTTACAGTCGCTGCTGCTAACGTCATTTGTGCTCTCTGCTTTGGAAAACGTTACGGGCATGATGACCCGGAGTTCAGGGCACTTCTGGGTAGGGTAGATAAGTTTGGAGAGACAGTGGGGGCTGGGAGCTTAGTAGATGTCATGCCTTGGCTTCAGTCTTTCCCAAACCCAGTGCGAAGCGTCTACCAGAACTTCAAGACTATCAATAAGGAGTTCTTTGCTTATGTGAAAGACAAAGTAGTGCAGCACAGAGACACATTTGACCCCGATGTAACGCGAGACATGAGTGATGCAATCATTAGTGTGATTGAACATGGAAAAAATAACATGTTGTCTAAAGACTTTGTGGAGGGAACCGTGACAGATCTGATTGGAGCAGGGCAGGACACTGTATCTACGATTATGCAGTGGATGTTGCTGCTCTTAGTGAAGTACCCAGCCATGCAGACCAAGCTCCAGGAGCAGATTGATAAAGTGGTTGGCCGTGACAGACTGCCCTCAATGGAGGACAAGATCAACATGGCCTACCTGGATGCTTTCATCTATGAGACCATGCGCTACACCAGCTTCGTGCCTGTCACCATCCCCCACTCCACCACCACAGACGTCACCATCGAGGGCTTCCACATCCCCAAAGACACAGTGGTGTTCATCAACCAGTGGTCTGTGAACCACGACCCACAGAAGTGGCAGGACCCCCACATCTTCAATCCCTCAAGGTTCCTGGATGAAAATGGAGCCCTTAACAAGGACCTGACCAGCAGTGTAATGATTTTCTCCACAGGTAAGAGAAGATGTATTGGTGACCAGATTGCCAAGACAGAGATCTTCCTGTTCTTAGCCATTCTGCTGCATCAGTGCACATTCAAGAGTAACCCCTCTCAGACTCTCACTATGGACTGCTCATACGGGTTAGTACTGAAGCCGGTCAAATTTTCAGTTACAGCCAAACTAAGAGGGAGACTCCTTGGCTTTGTGTCACCAGcataaattaaagaatgacttgCCAGCCCCTGATGCTCAAAGCGAGCAAAGACtgatacattttcaaatatatgACATATAACAGTGAGCATTAATAAACAAGCACTGAATGCtgttgtatatttaatatttaaagattaTTCACACATTTTGGGTAAGATGTATCTtttattaatggaaaaaaatggtcATCGTATTGTCTGATAGTTAAAAGGAACTGAGACAGTCTTCATCTCTTCTTGACTATAGGTAAaatctgtatatttacattgtGTATTCGATATCCTGTGTTTAAACAATATAAgctatgtgaaaaaaaaactttcagcaAGCAGTGCATAATTGTCAACATTAATGTAgtcataaaaaaatatgtacttTAGAATTGTTGATTTGCAGAAAACTGCTTTGATAGCTTCAGGTTCCTCTTTTGGTTCCTATGATTTGaagaaaatactgtatatgtatatgatttACTCAGATCTGTATAAAGTCATATAAAATGTGGATTATGAGTACTCATAACTGATGTATTTCaggtattttaaatattaatcatcTACCTTACATGTAAAGCCATCTACTGTATCCagattaaaagaataaatagcTTGACAAATTTGTAGGTAGTAAGAAAGTAATGATCATAATCTAGTAGTTACCATGCAGTAAGTGAGACATTGTGTCACTGGGataaattaaagtgaatttTGTGGCTCTTATGAAGAGTGTCCATAAGAGATCTTGGCCAAGTGGACTTACTTAGTCTTTTTCTTCCAAAtcctgtttttatatttcaccTGTCATTACAACCTAACTCACACTGGTTTCCAAGAAATTACTcatgatgaaatattttgtaataacacttttttaagTGCTGCTGCAAGCTATGCCATTAATTATGTATTGAGAAAATAATTCAGCtcttttaaagcaaagaaataaaattatttttgaatgtCCGTGCAAGCAGCCATATAAATTATGCATtgtattttcctttctttatacAAATTGAAAATAAGCTAATTTTGAagtgaattaaataaaagtaacaaCTTAAAACAA

Function

symbol description
cyp1c1 Enables coumarin 7-hydroxylase activity; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen; and testosterone 6-beta-hydroxylase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region.

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07410 CYP1B1; cytochrome P450 family 1 subfamily B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307745.1 True 2854 mRNA 0.41 2 20369134 20372103

Neighbor

gene id symbol gene type direction distance location
inf2 inf2,LOC107745357,LOC107678755 coding downstream 113259 20219874 ~ 20255875 (-)
adss1 adssl1,LOC107571830,LOC107703625,LOC107678758 coding downstream 156172 20202119 ~ 20212962 (-)
siva1 siva1 coding downstream 195056 20169130 ~ 20174078 (-)
akt1 akt1,LOC107716055,LOC107703621 coding downstream 242795 20065720 ~ 20126339 (-)
cep170b cep170b coding downstream 310132 20027293 ~ 20059002 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding upstream 72092 20444195 ~ 20453800 (-)
acp7 acp7,papl coding upstream 129046 20501149 ~ 20521426 (-)
chrm5a LOC108269673,LOC108430663 coding upstream 172663 20544766 ~ 20546294 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding upstream 197780 20569883 ~ 20728827 (-)
LOC113530231 NA coding upstream 360827 20732930 ~ 20733052 (-)
G168759 NA non-coding downstream 217831 20150293 ~ 20151303 (-)
G168758 NA non-coding downstream 219232 20149490 ~ 20149902 (-)
G168756 zbtb42,LOC106610857,LOC106582697 non-coding downstream 220398 20145267 ~ 20148736 (-)
G168750 NA non-coding downstream 262276 20106213 ~ 20106858 (-)
G168747 NA non-coding downstream 268562 20099127 ~ 20100572 (-)
G168908 NA non-coding upstream 70894 20442997 ~ 20443772 (-)
G169104 NA non-coding upstream 166759 20538862 ~ 20540283 (-)
G169109 NA non-coding upstream 175542 20547645 ~ 20547877 (-)
G169118 NA non-coding upstream 192052 20564155 ~ 20564828 (-)
G169126 NA non-coding upstream 201304 20573407 ~ 20573613 (-)
gchfr gchfr,LOC106583112 other downstream 38388 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 67580 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 350417 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 759356 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 773920 19589368 ~ 19595214 (-)
G169119 NA other upstream 192826 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 441586 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 716200 21088303 ~ 21119625 (-)
G170023 NA other upstream 1743462 22115565 ~ 22115876 (-)
G170435 NA other upstream 2483391 22855494 ~ 22863767 (-)

Expression


Co-expression Network