gpn1 (gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155)


Basic Information

Item Value
gene id gpn1
gene name gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28916376 ~ 28928895 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307776.1
GACAGCGCCGGTTTTCAGGTTTCAAATAAACATGGCCACCGCGCAGGCTGAGAGAGATGGTGCTGGGATtggaaatgaacaaaatgatgGAAGAGGCGATGAAAATCCAGAGACAAGCAGCGGAAAACCTTTCGAAAATACCGCGGAACAGAAGCCAGTGTGTCTCATAGTGCTTGGCATGGCGGGTTCGGGCAAAACTACTTTCGTTCAGCGACTCACAGCTCATCTGCACTCAAAGAAGAGCCCGCCGTATGTTATTAACCTGGACCCTGCGGTTCATGAAGTTCCGTTTCCGGCCAACATCGATATCAGAGACACAGTGAACTATAAGGAGGTGATGAAACAATACGGTTTGGGCCCGAACGGAGGAATCGTTACGTCTCTCAACCTGTTTGCGACGAGGTTTGATCAGGTGATGAAGTTCATTGAGAAGAAGCAGCAGAGTCATCAGTATGTTCTGATTGACACCCCGGGACAGATTGAGGTGTTCACCTGGTCTGCATCAGGAACCATCATAACCGAGGctctgGCCTCGTCTTTCCCGTGTGTGGTGATGTATGTGATGGACACGTCCCGCAGTGTGAACCCCGTCACCTTCATGTCCAACATGCTGTACGCCTGCAgtaTTCTGTACAAAACCAGACTGCCCTTCATCGTGGTCATGAACAAGACAGATATAATCGATCACCGCTTTGCCGTGGAGTGGATGCAGGACTTTGAGGCGTTTCAGGACGCGCTGAACCAGGAGACGTCGTACGTCAGTAATCTCACGCGCTCCATGAGTCTGGTTCTGGACGAGTTCTACACAAACCTGcgtgtCGTTGGTGTATCAGCAGTAACAGGTTCCGGACTGGATGAACTCTTTGTTCAGATCACAGACGCGGCTAAAGAATACGAGACAGAGTATCGTCCTGAATACGAGCGTCTGCATAAAGAGCTGGCCGAAGCTCAGAGTAAAAAACAGCAGGAACAGCTGGAACGCCTCCGGAAAGACATGGGAgaggtttccatggaaacagGTGTGCAACCAGACGTTCCTGACCTCAGCGGCCCCAGTGACCTCATCTTCACCCGCGGGAATCCGgacgaggaagaggaggacatGGACAGCGACACGGACGACATCGATCACCATGCTACAGAGGAGAGTAAAGAGGTCACGTCGTTTGGAAACTTCctgaaggacagaaagaaagtggTGGAGGTGCGAAACAGGAAGTCACAGTGACACCAGGAGGAAGTGCGAGTCCACGGTCCACTCCTTCACCCTTGACCTTGACCTTTGAACTCTTTACCACTGTATATTTATCGCATTTACATTCTCTCGTGTTCTGTGCTGGTCGGTTCTGTGATAGAACCCGGAGTCGGATCTTAAAGCTCCGAGATGTTCACAGTGTGGaggaataaatattaaatatttttatactctCA

Function

symbol description
gpn1 Predicted to enable GTPase activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human GPN1 (GPN-loop GTPase 1).

NR:

description
GPN-loop GTPase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K24104 GPN; GPN-loop GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307776.1 True 1431 mRNA 0.50 14 28916376 28928895

Neighbor

gene id symbol gene type direction distance location
il17a/f2 LOC108269798 coding downstream 31267 28882252 ~ 28885109 (-)
lrrc57 lrrc57,LOC107682003 coding downstream 38495 28867671 ~ 28877881 (-)
nfkbiab nfkbia coding downstream 144214 28768475 ~ 28772162 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 174305 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 186889 28722659 ~ 28729487 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 58464 28987359 ~ 28996157 (-)
mrpl57 mrpl57 coding upstream 143809 29072704 ~ 29075467 (-)
calm1a LOC108270185 coding upstream 160277 29089172 ~ 29092223 (-)
ndnfl LOC108270182 coding upstream 189478 29118373 ~ 29130728 (-)
LOC113525666 LOC108261332 coding upstream 209125 29138020 ~ 29146605 (-)
G173293 NA non-coding downstream 42058 28873443 ~ 28874318 (-)
G173292 NA non-coding downstream 44421 28871470 ~ 28871955 (-)
G173268 NA non-coding downstream 49701 28865913 ~ 28866675 (-)
G173289 NA non-coding downstream 52209 28862908 ~ 28864167 (-)
G173282 NA non-coding downstream 53768 28861401 ~ 28862608 (-)
G173260 NA non-coding upstream 5065 28933960 ~ 28985241 (-)
G173262 NA non-coding upstream 85454 29014349 ~ 29014929 (-)
G173338 NA non-coding upstream 141140 29070035 ~ 29071425 (-)
G173339 NA non-coding upstream 147368 29076263 ~ 29077297 (-)
G173288 NA non-coding upstream 149519 29078414 ~ 29080610 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 7824 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 56365 28798149 ~ 28860011 (-)
G172919 NA other downstream 1003832 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 1005486 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1190619 27671623 ~ 27725757 (-)
G173434 kif26b,LOC107589674 other upstream 307024 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 317074 29245969 ~ 29329076 (-)

Expression


Co-expression Network