LOC117598249 (sptbn5)


Basic Information

Item Value
gene id LOC117598249
gene name sptbn5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21289832 ~ 21296023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307943.1
ATCTAGTTCCCAGCACAAATTCTGACCAGACATCCATGcttgaaaatgaagaaaataccTCAGGAAACATAAATCTATCCCACAAATCCTCCTCTCTTGACACCCCCAGAGAAGTAAGGTTGTCAAGTCCAAATGAAGTGAGTGATGAACGTCCTAAATCTATATTTCTTGAATCGAATGAAGAGACTGAGGAATCTCCTACATACATACTTATTGAATcaaatggagagacagaggaacTGCCTAAATCCATACTTCTTGAATCAAATGAAGAGATTGAAGAATCTCCTACATCCATTCTTCTTAACCCTCCTGTAGCAAGTCCAAGAAAACTCGCAGCAATCAATACTGCTTCACCAGTGAGTGACCTTCCTCCATCTTTCTCCACCTTGCAACCACCTTCACCTCCACAGTCTCatccaccatcaccacccacacTGAGGATATCCACTGAGGAAGCTAAGGATTTAACTGAGGAACCACCCTCTCCAGCTTACAAGGTCAGAGAAGGCCTGATCAAGATGGAGGGACCACTGGATATTAAACTGAAACAAGGAGGATTTAAAGGTATGGATCATTGGGAAACCGTCTATGCACTACTGGAAGAAGAGACACTGAATTTGTTTAACGACCAAAATGCTGCTGGAGAGAACTGCACCCGATGGCCACCTATCACTATGGCTGGAGCAATTTGTAAAGATAACCCCTACTACAGGAGAAAGAACTACACCTTCAAACTGATACTGAATGATGGCAGTCACTACCTGTTTGCTGCGCCCTCTCAAGAGGAACAGCAGAAGTGGGTGGAGGAGCTGCAGAATTGCACCGGTCAGAGAGGCTTCTCAGAGAATATTGGGATGAACACAGAAGAAATGGTGGAGACGGCAAAGCAGCAGCTCTCAAAATTACTGGATGAATCGCATACACAAGTCTCCACCATTGAGCTGGAAAAAACTTCCACAGAGAGTTTTGAGAAGGAGAAGGAACCACCTCCCAAGCCCCCCCACACATACTACAACAAACACCGCTACCCAGATGGAGGAGAGGCCAAGGACTCAGtgactTTGAGAGGTCTGAGGAAGAACCAACCCCCCTCCTTCCCTCCACCTCTTCCCCCACAAAACCAGCAGGAGAGCGGAGGCAAAGAAAAGTCTAAGAACAAGAATGtcttcaaaaaaatatttaaaatataatttatactgCTTGGTAAAAATTTTCTTTGCCCATTAAAATCCTCTGTACCCACTGACTCAGGGTAGAGATGTTTCAGTGATTGCTAGGTGTAATAACAGGATATCTAATGCGAACAGAATAATAGCTATAAAGAATCACACTAGActgaattatttacatttgttttaacTGTCATTTTGTTTCTATATACATTCTGCACTTTGATTGTTCTCGTTCACTTCTATGTACTGACTCATATTTTTCGTACATTACACTACTTAGTGTACAATGAAATGAGTGCTGTGTATCAACTTTATTTCTCCccattaaatgttaatgaaagaaTAAACCTACGGAAGCCA

Function

symbol description
sptbn5 Predicted to enable actin binding activity and phospholipid binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Orthologous to human SPTBN5 (spectrin beta, non-erythrocytic 5).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307943.1 True 1535 mRNA 0.42 8 21289832 21296023

Neighbor

gene id symbol gene type direction distance location
sptbn5 sptbn5 coding upstream 24 21250285 ~ 21289808 (+)
ehd4 ehd4,LOC108270320,LOC108430677,LOC107697720,LOC107694734,LOC107582305,LOC107719481 coding upstream 42977 21230925 ~ 21246855 (+)
traf3 traf3,LOC107733154,LOC107694716,LOC107582288,LOC107590913 coding upstream 66199 21208322 ~ 21223633 (+)
rcor1 rcor1,LOC107733187,LOC107590914,LOC107582277,LOC107719500 coding upstream 84671 21193918 ~ 21205161 (+)
tecpr2 tecpr2,LOC107719478,LOC107697721 coding upstream 108273 21144875 ~ 21181559 (+)
foxg1a foxg1,LOC106611199 coding downstream 5888 21301911 ~ 21320414 (+)
g2e3 g2e3 coding downstream 203710 21499733 ~ 21510083 (+)
scfd1 scfd1,LOC107697716,LOC107719485,LOC107733096 coding downstream 219048 21515071 ~ 21539136 (+)
coch coch coding downstream 254370 21550393 ~ 21556431 (+)
ap4s1 ap4s1,LOC107590907,LOC107582370,LOC107733114,LOC107694810 coding downstream 294385 21590408 ~ 21598665 (+)
G169320 NA non-coding upstream 93540 21191166 ~ 21196292 (+)
G169287 ankrd9 non-coding upstream 106054 21181857 ~ 21183778 (+)
LOC117598333 NA non-coding upstream 182433 21104943 ~ 21107399 (+)
G169046 LOC103382302,LOC107666446,LOC107678759,LOC105907633 non-coding upstream 447658 20832846 ~ 20842174 (+)
G169045 LOC108270194 non-coding upstream 466449 20741344 ~ 20823383 (+)
G169543 NA non-coding downstream 243227 21539250 ~ 21539498 (+)
G169575 NA non-coding downstream 355618 21651641 ~ 21651902 (+)
G169652 NA non-coding downstream 472141 21768164 ~ 21768718 (+)
LOC117598284 NA non-coding downstream 545593 21841616 ~ 21843598 (+)
G169850 NA non-coding downstream 793451 22089474 ~ 22089698 (+)
LOC113530103 LOC108269986 other upstream 758610 20521595 ~ 20531222 (+)
fsip1 fsip1 other upstream 836027 20365174 ~ 20453805 (+)
zbtb42 zbtb42,LOC106610857,LOC106582697 other upstream 1141204 20142714 ~ 20148628 (+)
G168650 cep170b other upstream 1246897 20042477 ~ 20042935 (+)
LOC113538658 NA other upstream 1367346 19913343 ~ 19922486 (+)
G169577 heatr5a,LOC108412624 other downstream 373884 21669907 ~ 21674461 (+)
im:7136021 LOC108270035 other downstream 464748 21760771 ~ 21766373 (+)
G169692 LOC107990201 other downstream 523258 21819281 ~ 21820059 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other downstream 1565784 22861807 ~ 23022395 (+)
kdm1a kdm1a other downstream 3167443 24463466 ~ 24482854 (+)

Expression


Co-expression Network