ahctf1 (ahctf1,LOC106512612)


Basic Information

Item Value
gene id ahctf1
gene name ahctf1,LOC106512612
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29028670 ~ 29051439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307949.1
ATGACACATGCGCAGTTGTGACAGTATTTTGGAAATGGCGCCTGTGTTGAAGTGCTAGTCGGCGGTTGCAGAGTTTGTTAGCTTGGTTTACTGCTAGCTGGAATTTTctggcttatttatttacagaagtaAAAAGGTAACCCTTTAATGGATTTGCGCAGATTATGACCAAGGAGAGACTGCACCAGAAGACGCGTTTGATATATTCGACATTAATAAATCAGTTATCGGCACACAGGTAAATACGtgaggaTGCGTGACCTGGCAGCTCAGGTGACCAGCAGTCTGCTGCGTTTTCCTGCAGTGACGGTGGAAGCTTTAGGAGAAGATGAAGTGACGCTGGACTCGGTGCTTCATGGGAAATTCACCGCGGGTCGCAGCGTGTTGGCGTGGCTGGCGTGCGGGCCGCACTTGGAGGTGGTGCACGCGGCGACGGGCGAGCGTTTCTCTGCGTATCGCTTCAGCGGCGTGACGGATCACCTGCAGCCGAGCGTGACGGCGGTGAGAGAGTTCGGCTGGCTGAAGCGCAGCGGGCTGCTCGTGGGGCTGCAGGAGGACGAGAGCAGCATGCTGTGTCTCTACGACCTCGGCATCTCGCGCGTCATTAAAGCCGTCGTCATACCAAACAGGatcacTGCCATCGAGCCGCTGGTGAGTTATGGAGGAGCGAGTACGAGTACGCAGCACCTGCACCAGAGCCTGCGCTGGTTTTTTGGCGTGGTTGCCGTGGTGACAGATGTGGGACACGTCCTATTGGTGGATCTGTGTTTAGATGATTTCTCCTGCACTCAGACTGAGCTGGAGGCCTCAGATCTGGAGGTGGTGAATAAATGTCCGTCTGATATTCCGCGTCTGAGAGAGGGAGTCACTCAGCAGGGACGCCACCTCTGTCTCCAGCTGTGCAGCTCCACGGGGACGGGGGTCTCGGCGCTGCACTTCATCAGCCGCACCAATCAGCTCGCTGTGGGCTTCACCGACGGCTTCCTGCAGCTCTGGAACATGAAAACGCTgaagaaagaGTATCACTCTCAGCTGGAGGGCGGCCGAGTCCCAGTGTACGCCTTTAACTTCCAGGAGCCGGAGAACGACCCGAGGAACTGCTGCTACCTGTGGGCTGTTCAGTCAGCGCAGGATcttgagggtgatGTAGTCAGCCTCCATCTGCTGCAGCTGGCGTTCGGGGAGAGGAAGTGCTCAGCATCAGGGAAGATCATCTACGAGGGTCTGGAGTACTGTGAGGAGCGCTACAGTCAGGATCTGAGCGGTGGTGTGTTTCCTCTCAGAGCTCAGgccacacacactcgcctgctCAGCTGCCAGACCATCGAGAAGTTCCGCCATCATCCCGACAGAGAGGACAGCGTTAACGAAGTGGCGTCTCCTGATACGAGTGTGTCGGTGTTCAGCTGGCAGGTGAAGTCGTATGGACAGGGCCAGCCTTCCACCTTCATCGGCCTGTTCGACATTAACAGATGGTACCACGCGCAAATGCCTGACTCACTGAGGGCGGGCGAGTCTCTGCAGAACTGTCCCTACCTGGCCGTGTGGTCTCTGGACTCGGTGGTGGAGGTGACTCAGtcctgccccctgctggacgtTGTGGTTCATGAGCGCAGTCTGAGCAGAGCGCTGCCCCACACCTGCCCCCCTCCCGAGCAGTTCTACAACCCGAACACATACAACTTCGaagcgAGCTGTCTGCTTAATGCTGGAATAGTCCACTTCACCTGCTCCGGATATCAGAAAGAGACTCTGAGTTATCTGAAGAAAGCTGTGCCGAGTCTGAGTGACGGGATTTCTAACGGATATTCCCGGTGCCTGATGTCCGGCCTGCTGTCCTCTCGGCTCGCGGACGTTCAGCCGTCCAGCCTGACTGAGCAGGAGCAGCTGGACGCCATTTTAACCACAGCAGTGGAGAACGCTCTGGGTCTGATCACCGGCTGCATTAAACAGTGGACGACGGAGGAGCAGGCCGGATCCGCAGTGAACCTGCGCTACATCCTGGAGTGGGCCTGGGACAAAGTGGTCAAAACCAAAGAGGAGCTCGACGGCATATgtGCTCCATTATTCGACAGCTCATCTAATTTTACTGATCCTCAAACGCTGCAGCTTCTCCAGCACAGCCAGAGATTACTGAGTAACCTCAGCACCATCTTCCACTGCCTGCTGAACGAGGCTCAGGAGCTCACACAGAGAGGTGTAATCGGTCTGGTGAATAAGTGCATGGTGTCCAGTCTGATCTCTCAGTACGCTCAGGTGGTCCTGTGGTTCTGCCGCACCGGTCTCCTCCCCGAGAGCGCCGATGACGACGTGCTGCAGATATCGAGGCCTTTTTACAGTTTCTCTGTGATTAAGAATTATTACACGGGTCAGAGGGAGGAGCTGCACAGGCTCGCCAAAGATAAGTGGAACGCTGACTGTCTGATGATAGACGGGTTGGTGGCTCAGTGTGGCGAGCGTCTCTCGGAGCTGTGGACGAGAGACCAGGGCGGGACCGGGCAGTACCCACCTCCATCTCTACACGCCCTGCTGGATTTATACCTCCTGGAAAATGTAGAAGAATCTACCAAACACGCTATTGTGATTTATCTGCTCCTGGATGTGATGTACTCTTTTCCTAATAAGAGCGGAGCGTCAGTGGAATCTTTCCCCACGGCTTTCTCCATCCCCATCGGCTTAGTGAAGCTCGTACAGGGTCTGTGGTTACTCGATCACCACGACCACGAGaactCTCTGGACCTGCTGCTCCACCCCTCCGTCTCTCCGTGTGTGTGGGCGTGGCAGCACTCTCGGGTTCTGCAGGCTCTGATGATCCAGAACAAACACAGCACAGCGCTGCACTACCTGCACATGATGAAGCCCTCCATCACCTCCACCTGCTTCAccaagctgtgtgtgtctgtactgcTGCacaacaggtgtatagTGGAGGCGTGGGCGTTGTTGAGGCAGCAGGTTAATAAACTCAGCATGGACGAGCTGCTCAGGTTTTTCTATGAGACGTGTCAGGAGCTGGGTTTAATGAAGGAGCTCCTCAAACTCCCCCTCCAACCCTCTGAACaggAGTGTTTGGAGCGCTTCCTGCAGGAAACCGGAGGGTTCCAGAACAGAGAGCTCCTCATGGTTCACTATCTCCAGCAGGCCAACTACGTTCCTGCGCTGCAGATCAACCACACGCTGAAGATGAACctggctGGCGATCGCGATCCTAAGATGAAGGAGAGATCGAACACGAGGAACTCCATCATGAGTCAGTACGGGAAGGTGTTACCCCGCGCGCAGAGGAAGCTGGCCATCGAGCGCGCAAAGCCGTATCAGCACCCGTCCACCGTCCTCAGAGAGGTTACGAGGCCGCAGCCGTTATCCACCGTGGCTAAACGCTCCACTACCGAGAACGTCCTGAGCAGAGCGGCCTTCATTAAAAACGTCCTCACGAAGATTGAGGAGGTGTGGATCGGCAAGGACACCACGCCTGAGCCCTCCCCTCTcaagagcccTAAAGCTGCTGACGCTCTGGTGTCCAGCCCGAATCCTCCGACCTTAAACGTCCCTGAGGCTTTTGTTGGGACGCCGATTAACATGCTGACGAAGAGGATGTCCAGACTCTTGGATCTGGCGGTGCAGCCGTCGTCCCACGCGACTCCAGACGCGTCTCACACTCAGGCGACTCCGTCCAGATCCGTCAGTTCCTGGGCTGCACCTAAACACATCAGCAGAGCTCCGGAGCTCAGCCTGTTACACACTCCTCAGGTGGTGAAGAGAGCTCGAGCTTTAGCTGCGTCCGGTCCGGTCTTCTCCTCCTTCACCCCTCAGTCCATCCTAAGGAGCAGTCTCCGCCCCACTCCTATAGCCACGCCCACTGCATCACCTGCCCGATCAGCCACGCCCCCTTTACGCCCCAAAGAGAGTCGCATCACCTTCGTGGAGGACAGTGAATCTCCAGATCTACCCAAGAGCCCCTCCCTGCACTGGAGCAACGGgCTCACTGCAGTTGATGAAATTAGCGAGCTGAAGCGCCCACCCCTGCCACCAGAGGGCGGAGTCGAGGGATGGAGCGAACATTCTGgtgaagaagaggaggatgagagaGAACCCAGCGTAGCGCTCACACCTTCATTAGAACAGAAAGAGAGCGTGGAGACGGAGGAACCGACGCAGGTCTTACCCACGCTAGAGCGCAGGCCCAGTCTGGGACACGAGACAAGCGCACTCTCCGTCCAATCGgattccacgctggaattccaCGACGCTCCTTCTCCGGCGGATGTGATGAGACCAGCATGGCAGTCGAACAGCAGGCtggatgaagaagatgaagtCGTCATCGTCAGGCGTCCGGAGTCAGACACTGACATCAGATTGCTTTGTGCTGAAGAGCCGATTGTGAACCAGGAAATGGAAAACGATGACGTTTCGGAGTTTGAGATGCAGCCAGATGCACAAGAACATGCAAAAGAAGACACCGAGGAACGGAGCGAGGAATCGACAGCAGAAAGAGAAGTGCAGAATACGCCAGTTGTTCCGGTCGCTTCACTGGAGGAGTCGGATCAGGATGATTCAATGAATCATGAGGTAGTTTTGGCACCACGTGAACCAATCAGAACCTCTGGAATGTCTGAGGAGCCAATCAGAGCGGAGGAGATCAAGGACCTTGAGCCAGCTCCACTACCGATCACTGATGACGCCGTCACTGCCGAggagccaatcagagagagTCCCGAAGAATCTGAGTCACGTGAATCAGTTGAACACTCCGTGGTTAATAACGAGCCAATCGGTGAGCTTCCTGCTTTTGATAGCGACGCTGTTTCTGAAGAGCTGAAAGAGAAACCCGAGGCCATGGAGACATCAGATCTGGATGATTACGTGGAGCGTCAGTTATTCGGTGATCTCTCGCCTCCGCACTCCCACGCCGACAGTAAAGAGGCTTTAGAAGTTAACAGTGAGCCATGTGGAGATGTTAAAGATCTCGGAGCTGAAGATGATACACACAAATCTGTCGCCTCGTCTGAAGCTGCGACCTCCGAGTCACGATCTGTAGTCAGCCTGAACGACACTGAGGAGCTCTCCAGCTCTGACGAGGATGAAGAGGAGAttggggaggaggaggaagaggaggagaatgcAGAAGgcgaggatgaggaggaggaggaggaggaggaagactCGGGCAGTGAGGTGGAGATTATAGAGGAAGTAAAAGGAAACGGGACGCAGCAGCACCTTTACCTGCAGGACCTCCAACCTGAAGATCAGTTCCTCCAAGAGCAGGCGGCGGCTGTGCTGTCCCTCGTCTCTGACCCACAGCTGAAGGTGGTGGACGgctgtgaggaagaggaaggtcAGGTGGTGGTGGTTGGCCTGAGACCTGCGAGCctggatgatgaaggtgatgtgTGCTACACGGAGCTGAAGCCCTCCACCACTCTCCTCGTTCCTATCGAGCTGGCCGCTGAGCATCAGGAGCTTCTGCACGGAGCCGAGCTGCCCGAGGTCGCACTTCCTCTCAGCTCCAATAACTTCTCCCTCATGCTGGAGGCAGATGATGAAGAACCAGCTGCTTTAGAAATGGACGCTGAAAACCATCTAACTCTGCAAGAGAACACAGAGCACGCTGGAGATATGGAGGAAGAACCAAATGCTAACAGGGATGATGTTAGTGTGGAGCACGCTGTCCTCGAGCCTGAGGAAATGTTCAGAATGGAGGAGATACCTTCAGAAACGGTTGTGCCAGATGATGTGGAACCTAATAAAGTATACCTAATAGAGGAGGTTCAGATGGAGCAGGAAGTGACTGAATCTGAACCGAACGTGGAAGATCAACCTGGTGAACCAGCCGAAGAAGTTCAGAAACAGTCGAAGTCAGAAGCAGTGGCAGAACCTGAACCACTTATAGAAGATCAACCTGATCAATCAGCAGATGAAGCTCAAGCAGAGCAGACAGAAGAGAAAATGGAGCGAATTCCAGATTCTGCCATTGAAGCTCAAACAGCAGAGGAGCCTGAGGAGAAACCAGTGGAACCTTCACGAGAACCTGTGGAGAAACCAGTGGAAACTGCAGAGGAGCCTATGGAGGAACCTGTGAAGGAACCTGTGATTGAAGAGACTTTTGATGTAACTGATATATGTGTCACTGGTCAGGTTCAGGATTCAGGCTTGACTGAAGTCAAGGAGGATGGTTTGGTCCATAATGAGAAGATGGCTGTTGAAGATGTTGTAGAATCTAGTGAGCTGGTTCCTGTAGCTGAAGACCATGTTTCTGAAGCTAATAGAGCTGAGTTGAAGGAAGTACAACAAAGCCCagcaagaagaggaagaaagactGTTACATTTCCAGTAACCGTGATGGAACCTGAGAAAGATGCTTCTGAAGAGGAGCGAGCTGATTCGAAAGTGCCTTCCACACCAAGACGCGTAACGAGGAGCGGCAAGCAGCTGCTGGAGTCTGAAGTTCTCATCACACCAAGGAGAAGCACAAGAAAAACTGATTCTGAAGTCATTGTGGAGGAGGTGCCCTCAACAAAAGCAACTCCTCCACGTAAGACTTCACAGAAAGCTACACCCAGGAGAGGAGCTCGCAAAACGAGGAGCTCGAGTGCAAACGATGACGTTGAAGAAGTccagaaaatggaggaaacgTCAATTGTTGAACATCAGAGCGCAAGGAAGACTAGAAAAGTGGCAACAATCGAGGTCCCAGAGCCGATCCCTGAGGAGAAACCTGCGGAAAACCAAGCTAACACTAACGCTAGTCCCGGCAGGGTGACTCGCCAGTCGAGCAGGAGGCTGAGCTTAACGCTGGAGAACTTCCAGATGGTTTCAGACGTTCAGAACGCGTCTTTAGTGACGCCACCGAGGAGCAGAAGGAAAACCAGAGGCACTACGGAGGAAAAAGCAAACAACGAGACTTACATAGTGGACAGCGCTCAGCTTCAAAACGTTTCCAGACGACTGACGAGGAGCCGGCACTGGAACGACGGAGAGGAACTcgagaaaccagagaacctggaatCCACCAATCTGCTGGAGAGCGCTTTGATGGAGAGACTGAACAATGACCAAGCTAAAGAGAGTGAAGTGGTAACGGAGATAGTGCGCGCCAAGCGGCGGACCAGATCTGTAGCTCCAGCTGTGGACCATGAAGAGCAGAACGCTGAAGCTCCGGAGTCAGCGCTTTCTACTGAGCAGCAGGAGCAGAAGAAGAAATCTGCTCCGTCTGTTAGAAGAACGAGAGCCAGCAAAGCGCCAGAACCCGACACCTCACCTGTTAGCGACGGCGCGTCTGGGGCTCAGAGAGCGAGAGgaaagaagaaagacGTCGCTGTAAACGATGTTGTTTTGTCTCCTCCTGTGACCCGAATGAGACGAGCGACCGCGGTTCCTGACAGCCGGCTCCAGGAAAAGATCTTATCGGATGAAGCTGCAGTGGAAGCTGAAGCGGAGGTTAAAACGAGGAAGAAGAGAACGACGAGAGCGAGAGCCGAGCCCGAACCCGTGACGGTGGAGCTCCTGTCTCCTCTGGCGAGTCCAGCAGAACCGGTTCAGAGGAAGAAGCCGGCGGATCGAGAGGCCGCCGCTCCGAAGATGAACCTGCGGCGGAGACGCATGATGGAGGCCATTTTCCCCAAACCAGTCACACGCAGGAAGAAACTTTAACGCTGATCACaccgccatcatcatcatcatcatcttcatcgtGGTTTTCTTTCCCTCTGGAGCTTCCTGTGTGCATCTGCGTGTACAGTAAACACACCTGTTTCCCTCACGTCCTGATTTTTACCAGGACTTTATGCTGCCTGCTGTTTTCTAATTAAGGaaatgatttttgaagtgaataaataaacagagctCTAATTTGGgagatttaattttatattaaataaataattaaacttcGAATGAGCGAAGTTTACAGCACGGAGCACTGAGGGAAGCCAAACGATGCAGAAGTCTTAAGTTTTAAAAACGTGCATTTCTACAAATGTAAATAGTCTTTTAGGGATGTTCTGAATAAAATTTGATACCTGTGAA

Function

symbol description
ahctf1 Acts upstream of or within digestive tract development and nuclear pore complex assembly. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in brain; digestive system; head; immature eye; and pectoral fin. Orthologous to human AHCTF1 (AT-hook containing transcription factor 1).

NR:

description
protein ELYS

GO: NA

KEGG:

id description
K25129 AHCTF1, ELYS; protein ELYS

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307949.1 True 8031 mRNA 0.54 37 29028670 29051439

Neighbor

gene id symbol gene type direction distance location
snap25b snap25b,LOC103032718,LOC108415625,LOC108270282,LOC107693159,LOC107589629,LOC107586606 coding upstream 2432 29008520 ~ 29026238 (+)
ankef1b LOC108269963 coding upstream 21904 28997024 ~ 29006766 (+)
emilin1b emilin1,LOC107693157,LOC107729260 coding upstream 44801 28968131 ~ 28983869 (+)
il17a/f1 LOC108269793 coding upstream 130067 28895892 ~ 28898603 (+)
LOC113533718 insm2 coding upstream 231895 28792839 ~ 28796775 (+)
ttc7b ttc7b,LOC106601235 coding downstream 24163 29075602 ~ 29087181 (+)
fam149b1 fam149b1 coding downstream 52889 29104328 ~ 29114239 (+)
LOC117598241 NA coding downstream 99198 29150637 ~ 29157548 (+)
kif26ba kif26b,LOC107589674 coding downstream 124232 29175671 ~ 29243356 (+)
tfb2m tfb2m coding downstream 280817 29332256 ~ 29344637 (+)
G173209 NA non-coding upstream 35200 28990797 ~ 28993470 (+)
G173208 NA non-coding upstream 38964 28989119 ~ 28989706 (+)
G173198 NA non-coding upstream 55241 28914092 ~ 28973429 (+)
LOC117598233 NA non-coding downstream 1697 29053136 ~ 29054210 (+)
LOC117598323 efcab2 non-coding downstream 12743 29064182 ~ 29173464 (+)
G173215 NA non-coding downstream 27798 29079237 ~ 29080134 (+)
G173228 LOC108270182 non-coding downstream 65885 29117324 ~ 29119753 (+)
G173237 NA non-coding downstream 118435 29169874 ~ 29170599 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other upstream 92970 28861462 ~ 28935700 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other upstream 957589 28028000 ~ 28071081 (+)
trnak-uuu_7 NA other upstream 1303391 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 1561104 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 3597741 25426891 ~ 25430929 (+)
kif28 kif28p,LOC108270380 other downstream 2794 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 18281 29069720 ~ 29073089 (+)
nrde2 NA other downstream 42025 29093464 ~ 29138776 (+)

Expression


Co-expression Network