LOC113529663


Basic Information

Item Value
gene id LOC113529663
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21026507 ~ 21040538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308031.1
ATGTCTAAGGCCAAAGACAAATCGAAACTAAACCGGAAGGGCGAGATTAGCGGACAgcgttttaggctatcTACCGTCCGCTCCCTGGgttcggaagcacgctctgcggtttcttccccccggggagtGGGCCCGGCGCTCCGCCtgtcttcctccgaggaggttgacGTGGAGGGCGCCGATCCTGCGCCGCAGTCTCCCCAATATGAGGATCTGCTGGAGGTGGTTTCGCGGGCCGTCGCTAAGTTGAGTATCGAATGGCCCGCTGAGACTCAGGTTTCGCCGGCGAGGTCGAAGCTCGATGAGCGCTTTTTGCGCAGCAGACCGCCACCTCCACGCCGGAGCCTGCCGTTCTTTCCTGACCTCCACACCGAGGTGTCGAGGTCGTGGAACAGGCCCTTTTCCGCAGAGACTCTGTCGTCGACAGGTACCAACAGACTCGCGCTCAGGCTGCAGCCTTTCAGCGATTTCTCCCTCGTCGCTCTCGTGGGGCTGCCGGgtgggggcagccccctccgtgtacggtcgcctcccgtgctcccccaAGGCGGGACCGGGAGTTTCGACGGCGCTCCAGGCCCGggcgctacggtctccggcgagcgctTCTCCCAGCTCCCGCCcggcaacgtagcgggtctgggaggctcgcagCCTCCTTGGAGGCCTGCCGAGCAGCTAGCCCAGGCATTCCCTGTCGGTTCGCCGCTCCAGGGCGCTAAGCTACCAGGCCGCTTCTGTCAtgccagagagagaggctaccgaatccAGTTCGGCTTTCCTCCGCCTCGTTTCTCCGGGGTTCTTCCCACCTTGGTGGGCCCCGTGCAGGCTCTGGtgatggaacaggaagtgtgcactctcctgaggaaggaggccatcgaggtggtccctcctcacgacagagagtccggcTTTTACAGCCgctacttcattgttcccaagaaggatGGGGGGCTGCGacctctagtcgctcgactgaagttcaggatgctcacggtcactcaggtcgtgcctcagatcaggtccgaggactggtttgtcacgatcgacctaaaacatgcatatttccatatctccatccttccccaacacaggaagttcctgaggttcgctttcgggggcgaagcttaccagtatcagGTTCTTCCTTTCGGcttagcactctcaccccgcaccttcacgaagtgtgtggatgctgctctggctcctatgcgactccagagcatccgcatactgaactatatcgacaattggttgatattagctcgatCAGAGCAGTTGGCGGTTCGGCATCAAGATGTCGTTCTCACCCACATGAAGAAACTGGGGTTAAGGCTAAATGCCgggaaaagtgtgctttctccggTTCAGAGAACCACTTACCTGGgcgtggtgtgggattcgaccacgatgcaggcgcGTTTGTCTCCCGCTCGGATAGAGTCGATCCGCACGGCAGTCGCGAGAGTGAGggaaggccggtcactcactgtcaagcagttccagaaactgctggggTTGATGGCAGCAGCGTCCATCGTAATACCCTTTGGCCTGTTACATATGAGGCCcttacagtggtggctcaagaccagggggttctccctgaggggaaaTCCGCTCCGGATGATCAGAGTCACGAGGCGGTGCCTGCGGGCTCTAGACATGTGGAGGAAGCCTGgcttcttgtctcagggcccggtgctgggagctcctggtcacCGCGTAATGCTAGCGATGGACGTGTCCCTCACCGGTTGGgaagcggtcatgagtggccgctcagcccgtggtctgtggagtgGCCTCCGTCTCttttggcacatcaactgcctggagatgctggccgtgctTCTAGCACTAAAACATTTTCTCCCGGACCTAAGAGGTTgtcacgtgttggtgcgcaccgacaacacggcaGTGGCCTATTACATaaaccaccagggaggtctgcgttcacgccccctttacaggctggcgctccagatccttgtgtggtcccagggaAAGCTCCTCCCGCTGAGAGCAGCTTATATCCCTGGCCGTCTCAATACAGGAgcagacgccctgtcgaggcaggggccgatccccggggaatggagactccaccccgaggtggtggagcagatatggcgGGCGTTCGTTCGAGCTCAGGTCGACCTGTTTGCGACacaggagacgtcgcactgccccctttggttctctctgactcatccagctcccctGGGACTGGATGCTATGGCACGGGCatggccgaggctgcgtctgtacgcctttctGGAGAGAGTGCACCGGGACGGGGTCCGTCTGTtgctagtagccccgttctggccgggccgagcatggttctcggacctgatttcccttctcgacggctctccatgggagattcccatcaggagggacctcctctcacaggcaggGGGCAACATTCTTCACCACCAcccggagttgtggaagctttggaggggtcgTCCTGctactaagcagaccctcagctgGTGGATCGTGGAAGCCACATCCCTGGCCtatgagtcctctggtctcccctcgcccctgggggtcaaggctcattCGACCCGAGCTCATCCAGAAATCTCAAAGCCGTGCTGCTCCATAACAGGAACAAGTACCCGTCTCTTCCCTAGCTTGGTGTACCTCATAGAGGATTACGACAGCATCAAGACATTGCTGGATGCCTTGAAGTATGATGAGTACTGCTGGGAGGTCATCAGAGACTTCAAAATGGTGGCATTCCTGATGGAGCTGATGTTCGAGGAGCCTAAACAGTACCCTCTTGAGGTGCTGGATGTGTGTCTACAGGCATGGCAGTGTGCCAACCAGAGCATGATTTCTTGTTCCTTCCAGGAGATCTGGGagtcattggtctgcatatacGTTAAGCCCAGAACCACCAGGAACTTGGTAGTGACAAGGAGAGAAATGCGGTCCTGGTGCATGGCGCTTATGTGGAGCATGATGGGTTCAGTACAGTGGGTGACTGACAACCCTCCTATGGGTCCTCCAACCAGGGCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308031.1 True 3045 mRNA 0.59 8 21026507 21040538

Neighbor

gene id symbol gene type direction distance location
LOC113530222 LOC108269994 coding downstream 70242 20896634 ~ 20956265 (-)
actc1b acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding downstream 184355 20838057 ~ 20842152 (-)
arhgap11a LOC108270194 coding downstream 190828 20821801 ~ 20835679 (-)
LOC113530231 NA coding downstream 293455 20732930 ~ 20733052 (-)
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding downstream 297680 20569883 ~ 20728827 (-)
ankrd9 ankrd9 coding upstream 141227 21181765 ~ 21183223 (-)
prkd1 prkd1,LOC107590910,LOC107719483 coding upstream 351108 21391646 ~ 21438109 (-)
strn3 strn3,LOC107590905,LOC106611207,LOC107694787 coding upstream 516545 21557083 ~ 21591367 (-)
hectd1 hectd1,LOC107582380,LOC107697712,LOC107719534,LOC100380626,LOC102302438 coding upstream 557571 21598109 ~ 21649666 (-)
heatr5a heatr5a coding upstream 612175 21652713 ~ 21737438 (-)
G169126 NA non-coding downstream 452894 20573407 ~ 20573613 (-)
G169118 NA non-coding downstream 461679 20564155 ~ 20564828 (-)
G169109 NA non-coding downstream 478630 20547645 ~ 20547877 (-)
G169104 NA non-coding downstream 486224 20538862 ~ 20540283 (-)
G168908 NA non-coding downstream 582735 20442997 ~ 20443772 (-)
LOC113529548 NA non-coding upstream 190405 21230943 ~ 21241637 (-)
G169424 NA non-coding upstream 263668 21304206 ~ 21304537 (-)
G169435 NA non-coding upstream 277688 21318226 ~ 21318440 (-)
G169454 NA non-coding upstream 327902 21368440 ~ 21373041 (-)
LOC113529764 NA non-coding upstream 465897 21506435 ~ 21514989 (-)
grem1b LOC108269477 other downstream 209068 20813689 ~ 20817439 (-)
G169119 NA other downstream 460708 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 695761 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 724953 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 1007790 20013579 ~ 20018717 (-)
bmf1 bmf other upstream 47765 21088303 ~ 21119625 (-)
G170023 NA other upstream 1075027 22115565 ~ 22115876 (-)
G170435 NA other upstream 1814956 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 2108205 23148743 ~ 23179511 (-)
luzp1 luzp1 other upstream 3449700 24490238 ~ 24544079 (-)

Expression


Co-expression Network