LOC117598271 (LOC108191637)


Basic Information

Item Value
gene id LOC117598271
gene name LOC108191637
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25171545 ~ 25173314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308043.1
CGTAGAGGCAATGCCttttcaccGCAAATGTTAATGAGGAAGAGTGACAGTAAATGAGCAACCTTACTACGACTCTGTTTTCATTGGCTACGGTTTAACTTGGTGTTTAGTCAGAGTTGCAACACCCTGCACGAGAACACTACAGTGAAAAGGCACCATTTGATGTTAAAGTGGTTAAGATGGCTACAAGCAGTAAGTCGTCTGTGTGCAGCGCAAGAAGCAGCAAGTCATCCGCATCATCGGCGAGTGCAGCCCATGCCCGGGCCAGAGCTGAAGCCGCCAAAGTGAGAGCATCCTATGCCAGCCAAGAGGCtaaactgaaaatggaaaaggCCACAAGAGAAGCTCAAAATCAGCTGGAAACAGTAAGAATAGACACTGAGTTGGAAGTGTTAACGCTTCAACGAGAAGCTGATGCAGCCGCTGTGGAGGCACAAGTGCTGGAAGATGCTGAATTAGCAATGCATGCTGCAGTTGAAAGAGGAGGATCTGAATCAGAGAAAGTTAAAATTGACCGTACCAGTGAATATGTCAATTCTCAAATCAACCTACAGAGGCATTCTCCCTCTCCACTCTTATCAGCCTTACCTGTTGCTCCTCCATTTCATGCTGACTCACATAACAGCTTCATAACATGGAGTGCACCTGCGAAagacacttcacatacacagtCTATCAACAACAAGCCGAAGTCTGAGAAAGCTGATAGTATGCACTTACCTGCAACAAACCTATCTGATCTGTCTACAGGTGTGATGAAGTCTGAAGTTGGGAGGACCAGCCCCATCATGAACGCACATGCTAAACCTTATGTTGCTCGATACATTCCTCCAGCTAGCACGCCACCTCAGGCAGAGCCTTTGGCACAGTATTTAGCACGGCGAGACCTCATTAGTTCAGGACTGTACCAATTTGATGATAAGCCTGAGAATTATCGGTCCTGGTATTCCTCATTCACCAGTGCAGCTCGTGAAGTTCACCTCACAGCAACCCAGGAATTGGATCTCATGACTAAATGGCTGGGAAAGGAATCTGGCGAAATGGTGAAACGCATCCGCTCAGTGCATGTCAGCAACCCCAACCTTGCTTTACACAAAGCATGGGAAAGACTACGTGAGTGTTATGCCGCGCCGGAAATCATTGAAAGGTCACTGTTTCAGCGATTGGACAGTTTTCCTAGGATTTCAGCTAAAGACTACACCAAATTACGTGAACTTGGGGATCTGCTTATGGAAATCCAAGGTGCTAAAGAAGATGGATATCTCACAGGTCTGTCATACCTTGACACTTCACGTGGAATCGCACCAATTGTAGAGAAGCTTCCATATGGGCTTCAGGACAAGTGGGTGACTTCTGGGTCAtggtacaaagaaaaaaatcacggCCACTTTCCTCcctttgagtatttctgtaactttgtGTGCTATGAAGCAGAAGCGAAACGACCCCAGCTTTATACATCAAAGCAGTGCTACAACAACTGCAAAACCAGACAGATCCATTGTGAAaagtttccatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308043.1 True 1520 mRNA 0.46 2 25171545 25173314

Neighbor

gene id symbol gene type direction distance location
ptger2a LOC108269911 coding upstream 38655 25114777 ~ 25132890 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding upstream 116295 25047670 ~ 25055250 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding upstream 310513 24783003 ~ 24861032 (+)
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding upstream 404129 24629095 ~ 24767416 (+)
ptafr ptafr coding upstream 610267 24554583 ~ 24561278 (+)
gpr137c gpr137c coding downstream 33522 25206836 ~ 25238591 (+)
gnpnat1 gnpnat1,LOC107693128 coding downstream 208398 25381712 ~ 25388660 (+)
si:ch211-266g18.6 LOC107680798 coding downstream 296144 25469458 ~ 25489162 (+)
cx40.8 LOC108269439,LOC108443405,LOC103044257 coding downstream 316961 25490275 ~ 25494255 (+)
fabp7a fabp7a,LOC108443406,LOC108269522,LOC107693085,LOC107723744,LOC107583466,LOC107751758 coding downstream 331168 25504482 ~ 25506510 (+)
G171413 NA non-coding upstream 36660 25134600 ~ 25134885 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding upstream 95070 25072746 ~ 25076475 (+)
G171215 NA non-coding upstream 371487 24759612 ~ 24800058 (+)
G171121 NA non-coding upstream 680336 24485328 ~ 24491209 (+)
G171135 smndc1 non-coding upstream 721478 24445603 ~ 24450067 (+)
G171430 LOC108191637 non-coding downstream 2512 25175826 ~ 25176233 (+)
G171440 NA non-coding downstream 15851 25189165 ~ 25239064 (+)
G171485 NA non-coding downstream 98535 25271849 ~ 25279677 (+)
G171522 NA non-coding downstream 215458 25388772 ~ 25389166 (+)
G171523 NA non-coding downstream 216052 25389366 ~ 25389505 (+)
G171329 NA other upstream 163779 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 170926 24994493 ~ 25000619 (+)
kdm1a kdm1a other upstream 688691 24463466 ~ 24482854 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 2149150 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 3351486 21819281 ~ 21820059 (+)
LOC117598238 LOC108191637 other downstream 3060 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 85497 25258811 ~ 25318277 (+)
LOC113534148 NA other downstream 253577 25426891 ~ 25430929 (+)
nrxn3a nrxn3,LOC107583487 other downstream 1983029 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 2551893 27725207 ~ 27725279 (+)

Expression


Co-expression Network