LOC117598272 (LOC108270379)


Basic Information

Item Value
gene id LOC117598272
gene name LOC108270379
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25521364 ~ 25533476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308044.1
AAAGAGAAGGCCAAACCTGAACCTTCTCTAAAAGAAAAGGTAAAGCCTGAAGCTGTTCTGAAAGAGAAGGCCAAACCAGAACCTTCTCCAAAAGAAGAGGCCAAACCTGAACCCGCTCCAAAAGAGAAGGCCAAACCTGAACCTGCTCCAAAAGAAAAGGCTAAACCCGAGCCTGCTCCAAAAGAAAAGGTAAAGCCAGAACCTGCTCCAAAAGAAGAAGCCAAACCCAAACCTACTCCAAAAGAGAAGGCCAAACCAAAACCTTCTCCAAAAGAAGAGGCAAAACCTGAACCTGCTCCAGAAGAGAAGGCAAAACCTGAACCTGCTCCAAAAGTAAAGACACAACCTGAACCTGCTCCAAAAGAGAAGGCAAAACCTGGACCAACTCCAAAGGTGAAGGTAAAACCTGAACCTGCTCTAAAAGCGAAGGCAAAACCTGAACCTGCTctaaaagaaaaggcaaaacCTAAACCTGCTctaaaagaaaaggcaaaacCTGAACCAACTCCAAAAGAGAAGGCTAAATCTGAAGCTGCTCTAAAAGAAAAGGCCAAAATTGAACCTATTCCAAAAGAGAAGGTAAAATCAGAACCAGCTCCAAAAGTAAAGGCAAAACCTGAACCTGCTCCAAAAGAAGCGTCAAAAcccaaacctgctccaaaaGAAAAGGCTAAACCTGAGGTTGCTCCAAAAGAAAAGTCCAAAGCTGAACCTGTTccaaaagaaaaggcaaaacCAGAACCTGCTCTGAAAGAGAAGGCAAAACCCGAAGCTGCTCCAAAAGAGAAGGTAAAACCAGAAGTTGCTCCAAAAGAGCAGACTAAACCTGAACCCACTCCAAAAGAGAAGGCAATGCCTGAACCTGCTCCAAAAGAGAAAGCCAAACCTGAACCTGGTCCAGAAGAAAAGGCTAAACCTGAACCAGTTTCAAAAGAGAAGGCCAAAcccaaacctgctccaaaagagaaggctgaacctgctccaaaagagaaagcaaaaccAGAACCTGCTCCAAAACAGAAGGTACAACCTGAACCTGTTCCAAAAGAGAAGGCAAAACCAGAACCTGTTCCAAAAGAGAAGGCAAAACCAGAACCTACTCCAAAAGAGAAGATAAAACCAGAAGTTGCTCCAAAAGAGAAGGCCAAACCTGAACCTGCTCCAAAAGAAAAGGCTAAACCCGAGCCTGCTCCAAAAGAGAAGGCCAAACCCAAACTTGCTCCAAAAGAGAAGGCCGAACCTGCTCCTAAAGAGAAGGCCAAACCTCAACCTGCTCCAAAACAGAAGGCACAACCTGAACCTGTTCGAAAAGAGAAAGTAACACCAGAACCTGTTCCAAAAGAGAGGGCAAAACCCGAACCTGCTccaaaagagaaagtaaaaccTGAACCTGCTCCAAAAGAAAAGGCCAAACCTGCTCCAAAAGAGAAGGCCAAACCTCAGCCTGCTCCAAAACAGAAGTTACAACCTGAACCTGTTCCAAAAGAGAAAGTAACACCTGAACCTGTTCCAAAAGAGAAGGTAAAACCTGAATCTGATGCAAAAGAGAAGGTAAAACCAGAATCTGCTGCAAAAGAGAAGGCAAAACCAGAATCTGCTTCAAAAGAGAAGGCCAAACCTGAACCTGCTCCAAAAGAGAAGGCCAAACCTGAACCTGCTCCAAAAGAAAAGGCTAAACCTGCTCCAAAAGAGAAGGCCGAACCTGCTCCAAAAGAGAAGGCCAAACCTCAACCTGCTCCAAAACAGAAGGCACAACCTGAACCTGTTCCAAAAGAGAAAGTAACACCTGAACCTGTTCCAAAAGAGAAGGTAAAACCTGAATCTGCTGCAAAAGAGAAGATAACACCTGAACCTGCTCTAAAAGAGAAGGCAAAACCAGAAGTTGCTCCAAAAGAGAAGGCCAAACCAGAAGTTGCCACAAAAGAAAAGGCCAAAcccaaacctgctccaaaaGAGAAGCTCGAACCTGCTCCAAAAGAGAAGCTAAAACCTGAACCTGCTccaaaagagaaagtaaaaccAGAACTTCCTCCAAAAGAAAAGGCCAAAcccaaacctgctccaaaaGAGAAGCTCGAAGCTGCTCCAAAAGAGAAGCCCAAACCCGAACCTGCTCCAAAAGAGAAGGCCAAACCCGAACCTGCTCCAAAAGAAAAGCCCAAACCCGAACCTGCTCCAAAAGAGAAGCCCAAAcccaaacctgctccaaaaGAGAAGGTAACACACAAACCTGCTCCAGAAGAGAAGACAAAACCCGCACCTGTTCCAAAAGAGAAGGCCAAACCCGAACCTGCTCCAAAAGAAAAGGCCAAACCCATACCTTCTCCTAAGAAagaagCTGAAGTGGCCAAGGAGGAGATCCCAGTAAAGAAAGaGCCTGAAGTTGCCAAAAAGGTTACACCAATCACAGTGAAGAAAGAGGTTGAAGTTGCCAAAGAGAAGGCTAAACCAGAACCTGTAAAGAAAGCAGTTGAAGCTgcaaaagaaaaggcagaacTTCCTTCCAAGAGagAAGCAGAAGTAGCAAAGGAGAAAGTCAAGCCAGTTAAAAAAgAGCCAGAAGTCGCTAAAGAAACACCGATCCCTGTGGTGTATCCCAGTGCCAAAGATATTGCCATGGAAGTGGAGCTCCTGAAAGCCATCAACCAAAAACTGTCCATTCTGGATTTATTGAGGAAAGACATCGGTGAAATAAGAACTGATCTGGAGGTCACTCAAAGCCAAATCGATCAATTAAGGATGGACAATCGGACGCTccaagAGCCCAAGGAATTCAAGGAGAAAGCAAAACCTGCAGTGATGAAGAAAGGACATAGACCCTTCAAAGAGAAGCTTAAAATATCGACTGTGGTTAAAGGACGCGAGGCTCTGAAAAACATCACTAAAGCAGCCACTGTGAAGAAAGAGCGGGTGCTAAAGAACATCACTAAAGCAGCGTTTGGAAAGAAAGAACAAGCTCCAAAAGAAAGAGTCAGGCTTGAGCATAAAAAGAAAGAAATTCCTAAAGAGAAAATCACCCCAGTGGAGAAGCTTCCAGAAAAAGAAAAACTTACTGAGATGACATTGCCTGaggagaagaaaacaaaagatgAGCCTGAGGTGACCAAGGGTCCTGAACCAGCAGAAGaggAAGAAGTCCCCTACTTCCAGTGTTTCTACGTGGATGAATATGATATCCAGTATCCCTTCTTCCCCTTTTCACCACCTTTCTTATGAGGGTCACCTGCATCAGGTTGCGTGAAATGTCGACATCTGTGATACATACAATAACCTTGAAAGGTTACTGATACACGGTTGGTCCTCAGTGTCGAAATCAAGGAGGTCGAGGACAATTACTTTTAATGAGCTAGATGAGCTTTCAAAAACGGGACAATACAGGCAATTCCATTTACTGTCTAGTTGTGTGTCTTGTTCTAGATATGTTTATGTTGCTGTAGATTTAGATTTCAAGTTCAGCTAGTTCAGTTGTGTCAATAATATGAAATGTCAATTGCATACTGTGGAAGCAGTTCAAGTTAAACAGCATTGTGCTACCTGTTTCGTGTTTTTACACTGAATGTAAGTCTTAAAAGGAATGGCAGAACTGTGTGTCCGTGAAAGCTCTGACAGACGACGACGGAAAAAGCACTCGTCTGATCACAGAAAACTTTGCACTGTGTTAAAAGACGAGGttttaataactgaaaatacATTGGTACTCGTGCCTCATTTTGATAGAGTGCTGATTCAAAGCATTCCACTACGTTCAATCAAAATGATGGATGAAATATATTTCCTTTGATTATGTAACAAAAACCTCACAGTAATCGATGTTAATGCAGCCACTGAAGGTACAGTCAGTATACAGTATCTTAAAGATGGATTTGTGGACTGTGAAGTTTGCTGAACATATTTCGTATCCACTGAACTATTTGAGAAGGTACAACGGTGTCAGCAATCGTACAGGACTTGGTGTAAATTTATATCTTTAAATTCTATAAATACTGACTTCCCCAACCTAATCTTTGTAGCTGGATTTCATGTTATTTAAGTAACCAAAGCTACAAGCACTCACCCCATCACCCCTCACCCTATTCTTAGCTATTCACAACTGTACAACTTAGTAAATTCTTACAGATATGCGCTTATGGGACCTTGATGTTGGATTATTCCTTCATCTTTTAAGGAAAGATAATGAATTTATGAGCTCCAGTGGcatcattatttattgattgaacACTGTAAAAACTGACatcttaacaagtgaaaatacattgaatatagtcaaatgtgtCTAGTATTTCccattataagattacaataaatcaaatataagactattaaatatattttcaaacatttttacttattttaagctttacatTTCTATTCTATTACATATTCTATTGGCAAATCATCTTGCTtcattctagaaataaatgcttacaaTGAgcaaattatctgccaatagaataagact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308044.1 True 4459 mRNA 0.42 18 25521364 25533476

Neighbor

gene id symbol gene type direction distance location
zgc:85722 LOC108270090,LOC108443409 coding downstream 52795 25431323 ~ 25468569 (-)
ros1 NA coding downstream 102901 25398090 ~ 25418463 (-)
styx styx,LOC107723651,LOC107680756,LOC107693126 coding downstream 124617 25389931 ~ 25396747 (-)
socs4 socs4,LOC108270091,LOC107564995 coding downstream 149559 25369505 ~ 25371805 (-)
wdhd1 wdhd1,LOC107583614 coding downstream 159503 25336546 ~ 25361861 (-)
LOC113534087 LOC108270379 coding upstream 1256 25534732 ~ 25555563 (-)
fyna fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790 coding upstream 23933 25557409 ~ 25574121 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding upstream 54012 25587488 ~ 25592743 (-)
si:ch211-266g18.9 LOC108270005 coding upstream 86540 25620016 ~ 25633883 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding upstream 101251 25634727 ~ 25640221 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 11744 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 51290 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 131493 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 229426 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 231862 25287152 ~ 25289502 (-)
G171755 NA non-coding upstream 240028 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 444320 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 524769 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 1061805 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1238656 26772132 ~ 26773050 (-)
G171569 NA other downstream 262002 25258839 ~ 25259362 (-)
G171256 NA other downstream 595140 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 977285 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2341853 23148743 ~ 23179511 (-)
G170435 NA other downstream 2657597 22855494 ~ 22863767 (-)
G171734 NA other upstream 45463 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 2031782 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2138147 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2366006 27899482 ~ 27910890 (-)
G172919 NA other upstream 2378761 27912237 ~ 27912544 (-)

Expression


Co-expression Network