si:dkey-288a3.2 (LOC108270389)


Basic Information

Item Value
gene id si:dkey-288a3.2
gene name LOC108270389
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26363066 ~ 26403989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308046.1
ATGACGATGAGCGGCCAtgctgaggaagaggaagtggcACGTCTGCTTGGCAGAAAGAGCCGAGGGGAGAAGCGAGTCTCGTTTCCTCCGGATGAGGAGATGGTTTCGGGATTTGCCGAGAGCAAGGACGCACGGCAGGACGGCGACAGTCGAACCTTGACAGATATAATTTTGGCCTACGAGCAGAGCTGCATAAAGCACAAAGTCGCACCCGATCCCAAGACACTGGACCAAATAAAGtttctTCCCCCAGGTGTTCGTTTGGATTATCGCTCGTGCGAGTCTCTGGAGGAGATTCTGAAATCTGTCCGGTTTAATCTGATTAACCTGCAGGGGGCGGAGCTCGAGGAAAATgGAGCCTCGTCACTGATGGATATGATTTCGTACTACGAATCAGCCACACATCTGGATGTGTCCTCTAATACGAGTATGGGAGTCTCGGGATGGCAGGCCCTCTCACGTTTACTCATACAGAGCGGATGCTTGTGGAGGCTGGATGCCTGTAACATCCCCATAGAGGATTATCCTGCACAGGCCCTGTCGAGAGCCCTCCTTAGCAGCAGACTGACAGTACTGCACCTTGAAAACACTGGACTGAGTGGAAAGCCGCTCTTCACACTCGTTTGCTCTCTAAAGAAGAACATCGCTCTGCAGGAACTCTACCTGTGTGACAACGAGCTGAACAGCTTCCACGACTCCATGCAGTTAGGAGAGCTTCTCAAATACAACCGCACTCTCCGAACCCTCGACCTTAGCGATAACGCCATATCTGACTCAGGTCTTGAGGAGCTCTGTGATGGTCTGAGAGTTCAGAAGTCTGGTTTGAGAACATTAGTGCTGCATAACAACCAGATTACTCACCGTGGCATGACTCATCTAGAAAGTGTTCTGCCTTTGTTGAGGACGCTGGAAGCGTTGGACCTTAGCGATAACAACCTAGAGGACAGAGGGATGCACACGCTGAAGGAGGCGCTCATCAGTAATCGCTCTATTACACAACTCAGCCTGGCTTCAGTGGGAATAACATGTGAGGGTGCCGTGGTGCTGGCCGAGTTCCTGGCTGAGTCTCGGTTCCTCCAAACTCTGGATGTGAGGCAGAACCTCGTCCTCACTGGAGGCCTGATGGCTTTCGCTCTGGCCCTGAAGCTCAACCGCACTCTTGTTCATTTAGACCTGGACCAAAATCCCAAAGAGGAGAAGGACGAGTTTCTGATTGAAACCCAGAAGAATCTACTGAGCAGGATCTCTGATCTGTGTGCGGCGAATGCTGCGGCGGCCTCGGAGACGGACCGGCGCTCTGCTACGCTTTTAACGCGTGACAACGACGACGGGAAAGATAATGACGGTGAAGCCGCAGCTCCCCAAGTCCCCACCCAAACACTTGCAAGCGTAGAAGAACAATAATTCCGTTGCAAATAATGCTAAACTCCAAATCCACGTAATAAAGCTGAAGCCTCTCTCCCTAATGAAGC

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 37-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308046.1 True 1472 mRNA 0.52 10 26363066 26403989

Neighbor

gene id symbol gene type direction distance location
LOC113534079 LOC108269777 coding downstream 41441 26312809 ~ 26321625 (-)
cx52.7 LOC108269563 coding downstream 682325 25679314 ~ 25680741 (-)
manea LOC108270006 coding downstream 693091 25664338 ~ 25669975 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding downstream 702411 25651808 ~ 25660655 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding downstream 722845 25634727 ~ 25640221 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding upstream 337385 26741374 ~ 26794919 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding upstream 414911 26818900 ~ 26845135 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 442857 26846846 ~ 26898308 (-)
ism2a ism2,LOC108413947,LOC107583490 coding upstream 525672 26929661 ~ 26955838 (-)
sptlc2a sptlc2 coding upstream 555834 26959823 ~ 26989620 (-)
G171874 NA non-coding downstream 304557 26058245 ~ 26058509 (-)
G171864 NA non-coding downstream 385039 25977796 ~ 25978027 (-)
G171755 NA non-coding downstream 584100 25773504 ~ 25778966 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 853446 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 892992 25469504 ~ 25470074 (-)
G172016 NA non-coding upstream 191292 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 368143 26772132 ~ 26773050 (-)
G172207 NA non-coding upstream 425329 26829318 ~ 26829729 (-)
G172211 NA non-coding upstream 466358 26870347 ~ 26870619 (-)
G172212 NA non-coding upstream 490779 26894768 ~ 26959616 (-)
G171734 NA other downstream 780539 25578939 ~ 25582527 (-)
G171569 NA other downstream 1103704 25258839 ~ 25259362 (-)
G171256 NA other downstream 1436842 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1818987 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3183555 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1161269 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 1267634 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1495493 27899482 ~ 27910890 (-)
G172919 NA other upstream 1508248 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 2394160 28798149 ~ 28860011 (-)

Expression


Co-expression Network