lrrc57 (lrrc57,LOC107682003)


Basic Information

Item Value
gene id lrrc57
gene name lrrc57,LOC107682003
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28867671 ~ 28877881 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308077.1
ttgataaaaaaataaataaaccacagCAACGGTCTGTATGTCCactagttagcttgctagcacCTTCCGCACCCTGGCGTTCTGTAATTTCCAAACTTTCATCATTTTATGGGAGATATTTTTCATGTCAGGTTTGAGTTAAAGTGAACTTTGCTGGGATTTTATGAACTTGTGTACTCAGTTTGTTGTCCGCGCACGGATTATTTTTGGATTAGCTTCGGTACCGGAGatagcttagctagctaactagctagctagagtaAAGAGAGGCAGTGTAAATGGGGAACAGCGCTCTCAAAGCTCACCTGGAGACCTCACAAAAAACCGGCGTGTTTCAGTTAACAGGCAAAAACCTGCAGgagTTTCCGGAGGAGTTACAGCGGCTCAGCGGGAATCTGCGCACTGTCGACTTGTCCAACAACAGGATCGAGACGCTGCCCGTGTTTATAGGAAACTTCCAGCAGCTGAAGAGTCTCACCATCAGCAACAACCGCCTGACCAGTCTCCCTGCGGAGATGGGGAAGCTGAGGAAGTTGGAGACGTTGGTGTTGAACGGTAATCATCTCTCTCAGCTCCCCGCCTCGTTCTCTCAGCTCAGAGCTCTGCGCACGCTCAGCCTCTCGGCCAATCACTTCAGAGAATTTCCCAGCAGCCTCGGCTCCCTGCGTCAGCTCGACGTCCTCGACCTGTCCAGAAACCGCATACAGGCCGTTCCTGCCGAGGTGTCCGAGCTGCAGGCCATCGAGATCAACCTCAACCAGAACCAGATCTCCGCTCTGTCTCCGGAAGTTTCTCGCTGTCCGAGACTGAAGGTGCTGAGGTTGGAGGAGAACTGCCTGGAGCTTTCCTCCATCCCCACCtccatcctcacacactccagcgTGGCTCTGCTCTCCCTCGAGGGAAACCTGTTCGAGGTGAAGAAGCTGCGCGACCTCGACGGATACgacaagtaCATGGAACGCTTCACGGCGACGAAGAAGAAATTTGCATGAAggacaaaaaaaccccaaaaaaacggGTAACTAGGGACACgacagaaaagaacagaaaaatatttcagtgaagATTAAAACTGCAGCGCCGAGTTTCTGCTGTACGGAAAACTTCAGCGAGGAATCACTACACAGCGTATAACACACGGCGTTAGAGCGGCAAGATGTCACGCTTTAACGTCCTCACACACAGGTTTCAGAGTGTTtaaatccaacacacacacacacacacacacacacacacacaggtggagTGCGACACTCAAACTTCAAATACATAGAGTTTGTAGTACAGAGAGTCAAACACGAGGCGTTAAAGATCTTAATTAATTTACGTTCATTCATTTTATGATAATTTATAATACTTCACATAATTGTCAGTAACTTCCAAGTTATTTTAAACAGGCACTGAggtttcagatttttatttgttcactGTTTGATTTTCAAAACCAACATCaggatttctctctctctctctctctctctgtctgtctctctgcctttaTCTCAGTAGTCACATCCTCCTCTCTGTGCTGGAAAAAAACTACATAAAGcacatatttatttgaaatagaGCCATTTACTGACTGTTAAACTTAAAAAATAGGCATCAGACAGTTGCAAAAGTATACCTAGACCTCTTATTAATGTCTTATTAAAGTCTTATTAACGTATTA

Function

symbol description
lrrc57 Orthologous to human LRRC57 (leucine rich repeat containing 57).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 57

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308077.1 True 1675 mRNA 0.46 6 28867671 28877881

Neighbor

gene id symbol gene type direction distance location
nfkbiab nfkbia coding downstream 95509 28768475 ~ 28772162 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 125600 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 138184 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 176269 28687175 ~ 28691402 (-)
pnn pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 coding downstream 181420 28680699 ~ 28686251 (-)
il17a/f2 LOC108269798 coding upstream 4371 28882252 ~ 28885109 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 38495 28916376 ~ 28928895 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 109478 28987359 ~ 28996157 (-)
mrpl57 mrpl57 coding upstream 194823 29072704 ~ 29075467 (-)
calm1a LOC108270185 coding upstream 211291 29089172 ~ 29092223 (-)
G173268 NA non-coding downstream 996 28865913 ~ 28866675 (-)
G173289 NA non-coding downstream 3504 28862908 ~ 28864167 (-)
G173282 NA non-coding downstream 5063 28861401 ~ 28862608 (-)
G173274 NA non-coding downstream 108765 28757778 ~ 28758906 (-)
G173255 NA non-coding downstream 151000 28715522 ~ 28716671 (-)
G173260 NA non-coding upstream 56079 28933960 ~ 28985241 (-)
G173262 NA non-coding upstream 136468 29014349 ~ 29014929 (-)
G173338 NA non-coding upstream 192154 29070035 ~ 29071425 (-)
G173339 NA non-coding upstream 198382 29076263 ~ 29077297 (-)
G173288 NA non-coding upstream 200533 29078414 ~ 29080610 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 7660 28798149 ~ 28860011 (-)
G172919 NA other downstream 955127 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 956781 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1141914 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1215370 27565258 ~ 27652301 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 23023 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 358038 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 368088 29245969 ~ 29329076 (-)

Expression


Co-expression Network