Gene
RNA
| Item | Value |
|---|---|
| gene id | lrrc57 |
| gene name | lrrc57,LOC107682003 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 28867671 ~ 28877881 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| lrrc57 | Orthologous to human LRRC57 (leucine rich repeat containing 57). |
| description |
|---|
| PREDICTED: leucine-rich repeat-containing protein 57 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034308077.1 | True | 1675 | mRNA | 0.46 | 6 | 28867671 | 28877881 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nfkbiab | nfkbia | coding | downstream | 95509 | 28768475 ~ 28772162 (-) |
| ppp2r3c | ppp2r3c,LOC107682116,LOC107725453,LOC106611177 | coding | downstream | 125600 | 28736318 ~ 28742071 (-) |
| LOC113534010 | fbxo33 | coding | downstream | 138184 | 28722659 ~ 28729487 (-) |
| gemin2 | gemin2,LOC107589646,LOC107725416 | coding | downstream | 176269 | 28687175 ~ 28691402 (-) |
| pnn | pnn,LOC107729287,LOC107693145,LOC107682204,LOC107586617 | coding | downstream | 181420 | 28680699 ~ 28686251 (-) |
| il17a/f2 | LOC108269798 | coding | upstream | 4371 | 28882252 ~ 28885109 (-) |
| gpn1 | gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 | coding | upstream | 38495 | 28916376 ~ 28928895 (-) |
| khk | khk,LOC107729261,LOC107693158,LOC107725530 | coding | upstream | 109478 | 28987359 ~ 28996157 (-) |
| mrpl57 | mrpl57 | coding | upstream | 194823 | 29072704 ~ 29075467 (-) |
| calm1a | LOC108270185 | coding | upstream | 211291 | 29089172 ~ 29092223 (-) |
| G173268 | NA | non-coding | downstream | 996 | 28865913 ~ 28866675 (-) |
| G173289 | NA | non-coding | downstream | 3504 | 28862908 ~ 28864167 (-) |
| G173282 | NA | non-coding | downstream | 5063 | 28861401 ~ 28862608 (-) |
| G173274 | NA | non-coding | downstream | 108765 | 28757778 ~ 28758906 (-) |
| G173255 | NA | non-coding | downstream | 151000 | 28715522 ~ 28716671 (-) |
| G173260 | NA | non-coding | upstream | 56079 | 28933960 ~ 28985241 (-) |
| G173262 | NA | non-coding | upstream | 136468 | 29014349 ~ 29014929 (-) |
| G173338 | NA | non-coding | upstream | 192154 | 29070035 ~ 29071425 (-) |
| G173339 | NA | non-coding | upstream | 198382 | 29076263 ~ 29077297 (-) |
| G173288 | NA | non-coding | upstream | 200533 | 29078414 ~ 29080610 (-) |
| ralgapa1 | ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 | other | downstream | 7660 | 28798149 ~ 28860011 (-) |
| G172919 | NA | other | downstream | 955127 | 27912237 ~ 27912544 (-) |
| si:ch73-204p21.2 | NA | other | downstream | 956781 | 27899482 ~ 27910890 (-) |
| efcab11 | efcab11 | other | downstream | 1141914 | 27671623 ~ 27725757 (-) |
| foxn3 | foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 | other | downstream | 1215370 | 27565258 ~ 27652301 (-) |
| stmn4l | stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 | other | upstream | 23023 | 28900904 ~ 28908552 (-) |
| G173434 | kif26b,LOC107589674 | other | upstream | 358038 | 29235919 ~ 29239270 (-) |
| smyd3 | smyd3 | other | upstream | 368088 | 29245969 ~ 29329076 (-) |
