gcfc2 (LOC108270421)


Basic Information

Item Value
gene id gcfc2
gene name LOC108270421
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19460183 ~ 19474686 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308096.1
gagagacttttattttgacgcGTCGTGACCCGGAAGTGGAAATGCTTTGATCTCCGCCTGCATTATTGTCGGTTTTAAACTGGCAGCAGGATGTTTAACAAGAAAGCGAGGAGAAATTTTCGGCAACGAAGAGACGACTCCAGTGAAGAGGATGAAGGTGAAAAAGTCAGTGATGGTGTGAAGGAAGTGGACAGTTTAAAGCAGGTGAATGTGCGGAGAGGAATCTCATGCAGCTCAAAATCAAACCCAGCTCCAGCACACAGAGGCTCGTGCGCTGAGTCCagcccacaacacacacaggatcCTGAGCCCTCTAAAGCCCCAACTAAAGAAGACAAGACGCCCAAGAGTCAAACCCTGAGCTTCCTGGGTGAAAAAGAAGGTGCAGGCGAGAGTGACTTCAAGTTGAAAAGAACTGCGAACAAagctgtggtcttccaggctcGCAAAAAGGAAGATTCACCCATCAAGGTGACACCTTCACAACAAGATGTGGAAGACATTGAGCCTAAGGAGCAGTCAGAGAGCAGTTCTGCTGAGGACATGTCTCCAGACAGCAGCGATGAAACAAACTCCACAGCTTCCAGCTCCTCCAGCTCTACTGAGTCGTTCAAAACTCAGACCGTTAACATCCCTAATGCCGAGAAGATCCGCGCAGCTAAGGAGCAGAGGAGGAGAGCGAGGGCACAGCGAGACTACATTCCTCTGGATGCAGATCAGGAAAGTGGAGCAGAGGTTGGAGATAGAGCGCAGGATGAGAGCGATAGAGAACACGGCAGTGACGATGAACCGGACGATCACGAACGTAGGATCCAGTTTGCACCCAAATCCAAAACACTTAGAGAACGGATGACTGAGAAAATGGGTGGGAGTGGGAGTGAGGAGAGTTGCTCTGATAGCCAGGAGGAGGACCAGCACCTCTGGGAGGAGCAGCAGATAGGAAAAGGTGTTAAACGACACCAGAAGCAAAGTAGAAATGATTTCAAACCTCTCAGGCGGAAGAAAATGCTTGACATCCCTGAGACTCTTTCACCAGTCAGCATCGATATCATAAAGAAGAGAATCGCTGGAAAGCTGGAATCTCTGAAGGAGGTGCAGAGGGCTCATGAAGCCGAGCTCAGGAGGATGCAGCAGGACATAGAGAGTGCAAGGAGCTCTGTAGAGAACCTAGAGAACCATCCTGCTGACAGCCAGCTCCTCTTCTATCGCAGCATGAACACCTTCACCCAGAACCTGGTGGACTGCTTGTCTGAGAAGATGCAGCTGATAAACTCCACGGAGCTGGACATGCACAATCTGTATATTGACCAGGCGGAGGCGCTGTTGTCTCAGAGAAGAAAAGCAGTGCAGGAACAGTCCAGACACCTTCAGCAGTTAACCTACAGCACTAATCCACACAGCAATGGAGAAGCACTGGGGAAAACCAGCACAGCTACAGACAGTGAGCTGTTAGAGGAAGATTGTGGGAGCGTCCCAGCTGATTTGGGACCAACAGCAGAGCAGGAGGCCGAACTGCAGAGTAAAAGAAAGGACATACTGAAGGGAAGTCAGGAGATTTTTACTGATGTTCAGGACGACTTCtcagatgtgaagaaaatcctctCCAGGTTTAATGAATGGCGTGTCTCGTTTCCAGAGTCGTATACCAACGCCTACATCAGTTTATGTCTTCCTAAACTCCTGGCCCCTTTGATACGACACCAGCTCATTGGCTGGAACCCTCTCAAGGCTGAGGGTGAAGATTTTGAAGCACTGCCATGGTACTCTGCTGTCGAGAAATTCTGCCATGGACAAGGCTACGAAGAATCTGAGAATGTTGATGAGAAAACACTACCTGCTATCGTAGAGAAGGCCATCCTGCCCAAAATTCGAGGATTTGTGGAGCTGGTGTGGGACCCTTTGTCTCTGCAGGAGTCTCAGTGTCTCACGTCGCTTTGCAAAAGGATACAGGAGGATTACTGTGTTTTCGATGGTGAACAGAGCAAGCCTGTGAAGGCTTTTCTGGAAGCTGTTATGCAGAGACTCAGGAGTGCTGTGGACAATGATGTGTTCATCCCTCTTTATCCAAAAAGttatttggATGACAAGACTTCCCCACAATTCCAGTTTCAGAATCAACAGTTTTGGAGTGCTGTTAAGTTGCTTGGAAACATGGCATTATGGGATGGCTTGATCGCTCAGGATGTTCTGAAGGAGCTGATGCTGGACAAACTTCTCAACCGTTACCTGATGATGACTCTTCTGAATGAGTCCAATGCAAAGCACATTATACAGAAGAGCAAGAAGGTGACTGAGTGTTTTCCAAAGTCCTGGTTTGTGGATCTCAACACTGGATCATCACTATCACAACTGCAACACTTCAGCAAGCATCTTCTCCAGACAGCAGATTTATTATGTAAAGACAGAAAGGATCCCACCAGCTGCAGaaCTGTCCTATCTGATGTCATGATCCTTCTTTGGACCATCAAGGCATCTGAGAACATGAAGATTATAGCAGAAAAATACAATTGTCATGATTTGCTGGAATCTATAAATAAGTCATAGTTTTTTATCAATGTaacaataaatttatttttatagccaaGAAATCAATGTAttg

Function

NR:

description
GC-rich sequence DNA-binding factor 2-like

GO: NA

KEGG:

id description
K09061 GCF, C2orf3; GC-rich sequence DNA-binding factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308096.1 True 2599 mRNA 0.47 18 19460183 19474686

Neighbor

gene id symbol gene type direction distance location
ywhaqb LOC108269934 coding upstream 2624 19449741 ~ 19457559 (+)
dhx32b LOC108269478,LOC108436743,LOC107592761 coding upstream 81409 19369052 ~ 19378774 (+)
adam12 LOC108270250,LOC108436745 coding upstream 107870 19227546 ~ 19352313 (+)
LOC113538933 c9h10orf90,LOC107594852 coding upstream 235342 19204852 ~ 19224841 (+)
insyn2ab LOC108269663 coding upstream 335948 19091361 ~ 19124235 (+)
LOC113538831 LOC108269613,LOC108441832 coding downstream 2527 19477213 ~ 19492363 (+)
LOC113538896 LOC108269628 coding downstream 146161 19620847 ~ 19630120 (+)
mthfd1b mthfd1,LOC108269612,LOC108232073 coding downstream 171597 19646283 ~ 19669547 (+)
plcb2 plcb2 coding downstream 303882 19778568 ~ 19809259 (+)
LOC113538872 ankrd63 coding downstream 362572 19837258 ~ 19839847 (+)
G168011 NA non-coding upstream 481707 18977016 ~ 18978476 (+)
G167913 LOC107572756,LOC107690120,LOC107579140 non-coding upstream 618573 18839609 ~ 18841610 (+)
G167909 NA non-coding upstream 622861 18837091 ~ 18837322 (+)
G167735 NA non-coding upstream 811621 18648355 ~ 18648562 (+)
G167730 NA non-coding upstream 816765 18642292 ~ 18643418 (+)
G168175 NA non-coding downstream 48468 19523154 ~ 19524855 (+)
G168207 NA non-coding downstream 121737 19596423 ~ 19596967 (+)
G168504 inafm2 non-coding downstream 298204 19772890 ~ 19774666 (+)
G168585 NA non-coding downstream 413241 19887927 ~ 19888154 (+)
G168630 NA non-coding downstream 512962 19987648 ~ 19987870 (+)
prlh2r LOC108269650,LOC108425589 other upstream 881875 18569379 ~ 18578308 (+)
ldah ldah other upstream 1086103 18330467 ~ 18374080 (+)
kidins220a LOC108269813,LOC108425633 other upstream 1537432 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 1753351 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 2029432 17385507 ~ 17430751 (+)
G168191 NA other downstream 200227 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 248094 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 405049 19879735 ~ 19886509 (+)
LOC113538658 NA other downstream 438657 19913343 ~ 19922486 (+)
G168650 cep170b other downstream 567791 20042477 ~ 20042935 (+)

Expression


Co-expression Network