calm1a (LOC108270185)


Basic Information

Item Value
gene id calm1a
gene name LOC108270185
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29089172 ~ 29092223 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308210.1
GCGGTGTGTGTGTCGGTGGTGTTGGAGCTGttggagcagcagcagtgttttTATGCGGAGCTGATGGAGCAGCAGGAGCGCAGCATCACCGCTCTGATGAAGAGGATGGTGGAGATGAGCTCGGCACGGCTGATGAAGGAGCTCCATGACCTGAAGATCGGCCTGCAGAGGGTTCACACTGATGTCTCACTCCTCCGCCGACACACCGCCCTCACTGCACACTGCCTGGACAATCTGAGACACGGACTGATGGAGGACAGGAGGATGGTGGGCAGGAAGGGTGGAGGAGTGGATAAGAAGGCAGCAGGGAGGATGGAGACAGGTGGAGGTGAAGGCATGAAGACAGCAGAGATGAAAAGATCAGAGGTGTGGGCCAATGAACCGAAGGCCAAGAGACTGGTGGCAGATCTGACTGATATCCAACTCCACGATATAAAGGCTCTCGATCAACTCACTGAGGAACAGATCACGGagtttaGGGAGGCGTTCATGTTGTTTGATAAGAATGGAGACGGTTCTATCAGCACTGCAGAGTTGGGCTCAGTGATGCGCTCTCTGGGACAAAAACCCACCGACACCGAACTGTACGACATCATCAGAGAGGTGGACGCTGACGgtaATGGGAGGCTTGACTTCCCTGAGTTTGTCACTATGATGGTGAGGAAGATGAAGGATACGGGTGGTGAGGACGAGATCCACGAGGCCTTCAGAGTGTTcgataagGATGGGAACGGCTTCATCAGTGGGGCGGAGCTGCGTGTTGTCATGATGAACCTTGGTGAGAAAGTTACAGACGGGGAAGTGGATGAAATGATCAGAGAGGCAGATAAGGATGGAGACGGACAGGTCAACTACcaagAGTTTGTACAGATGATGAAGGCTCAGTGACGTTCTGCTCTCCTCACCTCCCCGTCGCACTTCCACTCagattctatttatttatttattta
>XM_034308211.1
CTACAATCTAAAAAAGTGGAGGTTCGATATTGGCCGAAAGTTAGACAGCTGGCAAGGGTCAAGGGTCAAgctcaggtttttaatcagtgGCTCTCGATCAACTCACTGAGGAACAGATCACGGagtttaGGGAGGCGTTCATGTTGTTTGATAAGAATGGAGACGGTTCTATCAGCACTGCAGAGTTGGGCTCAGTGATGCGCTCTCTGGGACAAAAACCCACCGACACCGAACTGTACGACATCATCAGAGAGGTGGACGCTGACGgtaATGGGAGGCTTGACTTCCCTGAGTTTGTCACTATGATGGTGAGGAAGATGAAGGATACGGGTGGTGAGGACGAGATCCACGAGGCCTTCAGAGTGTTcgataagGATGGGAACGGCTTCATCAGTGGGGCGGAGCTGCGTGTTGTCATGATGAACCTTGGTGAGAAAGTTACAGACGGGGAAGTGGATGAAATGATCAGAGAGGCAGATAAGGATGGAGACGGACAGGTCAACTACcaagAGTTTGTACAGATGATGAAGGCTCAGTGA

Function

NR:

description
PREDICTED: calmodulin-like

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308210.1 True 950 mRNA 0.53 6 29089172 29092223
XM_034308211.1 False 539 mRNA 0.50 6 29089234 29091389

Neighbor

gene id symbol gene type direction distance location
mrpl57 mrpl57 coding downstream 13705 29072704 ~ 29075467 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding downstream 93015 28987359 ~ 28996157 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding downstream 160277 28916376 ~ 28928895 (-)
il17a/f2 LOC108269798 coding downstream 204063 28882252 ~ 28885109 (-)
lrrc57 lrrc57,LOC107682003 coding downstream 211291 28867671 ~ 28877881 (-)
ndnfl LOC108270182 coding upstream 26150 29118373 ~ 29130728 (-)
LOC113525666 LOC108261332 coding upstream 45797 29138020 ~ 29146605 (-)
G173288 NA non-coding downstream 8562 29078414 ~ 29080610 (-)
G173339 NA non-coding downstream 11875 29076263 ~ 29077297 (-)
G173338 NA non-coding downstream 17747 29070035 ~ 29071425 (-)
G173262 NA non-coding downstream 74243 29014349 ~ 29014929 (-)
G173260 NA non-coding downstream 103931 28933960 ~ 28985241 (-)
G173349 NA non-coding upstream 15653 29107876 ~ 29108297 (-)
G173431 kif26b,kif26ba,LOC108415509 non-coding upstream 139390 29231613 ~ 29231919 (-)
G173433 NA non-coding upstream 141711 29233934 ~ 29234260 (-)
G173435 LOC107729288 non-coding upstream 147696 29239919 ~ 29241615 (-)
G173437 NA non-coding upstream 149877 29242100 ~ 29243390 (-)
G173287 NA other downstream 39146 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 180620 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 229161 28798149 ~ 28860011 (-)
G172919 NA other downstream 1176628 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 1178282 27899482 ~ 27910890 (-)
G173434 kif26b,LOC107589674 other upstream 143696 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 153746 29245969 ~ 29329076 (-)

Expression


Co-expression Network