mrpl57 (mrpl57)


Basic Information

Item Value
gene id mrpl57
gene name mrpl57
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29072704 ~ 29075467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308219.1
GAACCGCACTGATGCCAGAGTAAGGcgcggtgcattgtgggaaggTGCGCGAGCCGAATCACAGGAGGAGAAACCCATAACACGGAAAGaagattaatttaattaaagaagGATGTTCCTGACTCTGGCTCTGCTGCGGAAGGGAATTCCCGGCCGGCAGTGGATCGGGAAGTGGCGCCGGCCACGCCCAGTCACCTGGCAGATGAAGCGGAACACGGTGGAGCGACTGGAGCGAGAGGCTGAGAACGAGTACTGGCTGAGCCGACCTTACCTGAGCCTCGAGCAGGAGAGAGGCCACGCCCACGCTCGccgcacacacacctgggagACCCTCCGCCACGCCCGCCAGTCCGCCTTCCCCCCGCACACCTCCATTACTGAACACCTGCAGCACCTGAACACCACCCGCACCTGgagctaacacacactcagggctCTTAATAAAGCACTGAATCACTGTTA
>XM_034308220.1
TCCTTTTACAGCAGCAGAGAATAAAGTCACAGCGATAAAAGTCCTGTAAAAGATGTTCCTGACTCTGGCTCTGCTGCGGAAGGGAATTCCCGGCCGGCAGTGGATCGGGAAGTGGCGCCGGCCACGCCCAGTCACCTGGCAGATGAAGCGGAACACGGTGGAGCGACTGGAGCGAGAGGCTGAGAACGAGTACTGGCTGAGCCGACCTTACCTGAGCCTCGAGCAGGAGAGAGGCCACGCCCACGCTCGccgcacacacacctgggagACCCTCCGCCACGCCCGCCAGTCCGCCTTCCCCCCGCACACCTCCATTACTGAACACCTGCAGCACCTGAACACCACCCGCACCTGgagctaacacacactcagggctCTTAATAAAGCACTGAATCACTGTTA

Function

symbol description
mrpl57 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be active in mitochondrial ribosome. Orthologous to human MRPL57 (mitochondrial ribosomal protein L57).

NR:

description
ribosomal protein 63, mitochondrial-like

GO:

id name namespace
GO:0005761 mitochondrial ribosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308219.1 True 462 mRNA 0.59 2 29072704 29075467
XM_034308220.1 False 402 mRNA 0.59 2 29072704 29074793

Neighbor

gene id symbol gene type direction distance location
khk khk,LOC107729261,LOC107693158,LOC107725530 coding downstream 76547 28987359 ~ 28996157 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding downstream 143809 28916376 ~ 28928895 (-)
il17a/f2 LOC108269798 coding downstream 187595 28882252 ~ 28885109 (-)
lrrc57 lrrc57,LOC107682003 coding downstream 194823 28867671 ~ 28877881 (-)
nfkbiab nfkbia coding downstream 300542 28768475 ~ 28772162 (-)
calm1a LOC108270185 coding upstream 13705 29089172 ~ 29092223 (-)
ndnfl LOC108270182 coding upstream 42906 29118373 ~ 29130728 (-)
LOC113525666 LOC108261332 coding upstream 62553 29138020 ~ 29146605 (-)
G173338 NA non-coding downstream 1279 29070035 ~ 29071425 (-)
G173262 NA non-coding downstream 57775 29014349 ~ 29014929 (-)
G173260 NA non-coding downstream 87463 28933960 ~ 28985241 (-)
G173293 NA non-coding downstream 198386 28873443 ~ 28874318 (-)
G173292 NA non-coding downstream 200749 28871470 ~ 28871955 (-)
G173339 NA non-coding upstream 796 29076263 ~ 29077297 (-)
G173288 NA non-coding upstream 2947 29078414 ~ 29080610 (-)
G173349 NA non-coding upstream 32409 29107876 ~ 29108297 (-)
G173431 kif26b,kif26ba,LOC108415509 non-coding upstream 156146 29231613 ~ 29231919 (-)
G173433 NA non-coding upstream 158467 29233934 ~ 29234260 (-)
G173287 NA other downstream 22678 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 164152 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 212693 28798149 ~ 28860011 (-)
G172919 NA other downstream 1160160 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 1161814 27899482 ~ 27910890 (-)
G173434 kif26b,LOC107589674 other upstream 160452 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 170502 29245969 ~ 29329076 (-)

Expression


Co-expression Network