Gene
RNA
| Item | Value |
|---|---|
| gene id | mrpl57 |
| gene name | mrpl57 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 29072704 ~ 29075467 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| mrpl57 | Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be active in mitochondrial ribosome. Orthologous to human MRPL57 (mitochondrial ribosomal protein L57). |
| description |
|---|
| ribosomal protein 63, mitochondrial-like |
| id | name | namespace |
|---|---|---|
| GO:0005761 | mitochondrial ribosome | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034308219.1 | True | 462 | mRNA | 0.59 | 2 | 29072704 | 29075467 |
| XM_034308220.1 | False | 402 | mRNA | 0.59 | 2 | 29072704 | 29074793 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| khk | khk,LOC107729261,LOC107693158,LOC107725530 | coding | downstream | 76547 | 28987359 ~ 28996157 (-) |
| gpn1 | gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 | coding | downstream | 143809 | 28916376 ~ 28928895 (-) |
| il17a/f2 | LOC108269798 | coding | downstream | 187595 | 28882252 ~ 28885109 (-) |
| lrrc57 | lrrc57,LOC107682003 | coding | downstream | 194823 | 28867671 ~ 28877881 (-) |
| nfkbiab | nfkbia | coding | downstream | 300542 | 28768475 ~ 28772162 (-) |
| calm1a | LOC108270185 | coding | upstream | 13705 | 29089172 ~ 29092223 (-) |
| ndnfl | LOC108270182 | coding | upstream | 42906 | 29118373 ~ 29130728 (-) |
| LOC113525666 | LOC108261332 | coding | upstream | 62553 | 29138020 ~ 29146605 (-) |
| G173338 | NA | non-coding | downstream | 1279 | 29070035 ~ 29071425 (-) |
| G173262 | NA | non-coding | downstream | 57775 | 29014349 ~ 29014929 (-) |
| G173260 | NA | non-coding | downstream | 87463 | 28933960 ~ 28985241 (-) |
| G173293 | NA | non-coding | downstream | 198386 | 28873443 ~ 28874318 (-) |
| G173292 | NA | non-coding | downstream | 200749 | 28871470 ~ 28871955 (-) |
| G173339 | NA | non-coding | upstream | 796 | 29076263 ~ 29077297 (-) |
| G173288 | NA | non-coding | upstream | 2947 | 29078414 ~ 29080610 (-) |
| G173349 | NA | non-coding | upstream | 32409 | 29107876 ~ 29108297 (-) |
| G173431 | kif26b,kif26ba,LOC108415509 | non-coding | upstream | 156146 | 29231613 ~ 29231919 (-) |
| G173433 | NA | non-coding | upstream | 158467 | 29233934 ~ 29234260 (-) |
| G173287 | NA | other | downstream | 22678 | 28836892 ~ 29050026 (-) |
| stmn4l | stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 | other | downstream | 164152 | 28900904 ~ 28908552 (-) |
| ralgapa1 | ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 | other | downstream | 212693 | 28798149 ~ 28860011 (-) |
| G172919 | NA | other | downstream | 1160160 | 27912237 ~ 27912544 (-) |
| si:ch73-204p21.2 | NA | other | downstream | 1161814 | 27899482 ~ 27910890 (-) |
| G173434 | kif26b,LOC107589674 | other | upstream | 160452 | 29235919 ~ 29239270 (-) |
| smyd3 | smyd3 | other | upstream | 170502 | 29245969 ~ 29329076 (-) |
