LOC113534079 (LOC108269777)


Basic Information

Item Value
gene id LOC113534079
gene name LOC108269777
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26312809 ~ 26321625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308237.1
CGGATCTAACAAAGTATGGCTGAAAATATGGAGAAACATCCATGCAAACGCGTTTTTATCAACAATGTGGATAATTATACCTCAAAATATATAGGAAAGTTTTTAGCCTCATGTGTAGTTGGAGCATCCCATTTTCCTGAACAATTACAGGATGAGCAGGCAAACGAGTCAAGTTCCCAAAAAGAAGGATTTTATCAGATTGTTGGAACCGTTTCGGGTAAAATGGAGAAGAAGTCCAGTTTTACAGTAGAAGAATATACTAACTTAACACGTGAAGAGCTTTTCCATCACCTGATGGAGTCGGATGTTgtcatttataacatttacagcGAGCATGCTGATCAGATAGACGAAGCCTCTTGGGCGGTCTCAGCTCTTCACAAAGAAATCGATGCATTTCCTGGACCGAAGACGTTCATCTTAATCTCCTCGGTCATGACATGGGCTCTGACTAAGACACTCGATCCAGACGATCCAGTGATTCATCTTACAGAATGGGACTACAGGAGACGGAAACCGCATCCCAACTTTAAGGATCATCTCGCTGTGGAGAAGCTTGTGGTTAAACTGGGAAAATCTAATCCGTCACAGTTCTCTACTTATGTGGTTGCATCTGGACTGCAATATGGAAAGGGAGAGCAAgcgtttcatttctttttcaaggTAAATTGGCTGGGAGAGGAACGCTGGCGTGCCGATCTTCGAGACGGCTCCAATATCATTCCTGCTATTCACATCAGTGATCTGGCAGGgaTTGTACAGAATGTAATCGACCGTAAGCCGAAGCCGCAGTACTTTCTTGCAGTGGATGAATCACAGAATACCATTGCTGACATTATCAGCGCAATAGCGTTGGTGCTCGGGTCAGGAAAACCCAAAACGTTCCAGAAGAGGacgattttttttatagaagaaTTGACACAATCAGAAATTGACCATTTGTTCGTCAACCTTCGAATGGAAGCCATTTTTTTGAATAAGAATATCAGTAAAGTGAATTTCAGTATCAACTGGGTTTCAAAGAGAGGCATTGTTGAGAGCATCACCCGAATCGTGGAGGAGTACAAGCTCACCCGAGGCCTGCTGcctgttCACATCTGTGTCTTGGGACCTCCTGCTGTCGGGAAAAGCACCATAGCTGAAAAGATCTGCAAGCACTACAAACTGCACCATGTAAAACTCAAAGAGACCATCACTGAGACTCTCATGAACCTGGAGTCATGTGTCCGCGTGGGAGAGGCAGAAAAGAAAGGGGACGATGAATCACTTGGAACACAGGAGCTTTTGGAGACACTGACAaagaacatggaaaaaaatggagGCCGGTTGGATGGGCAGTATGTTATCCAAATCATGAAGGACAAGCTGAAGACTAAACCATGTAGAAATCAAGGATTCGTCCTGGACGGCTTTCCAAAGACATATGAGCAAGCTAAAGAGCTGTTTTGTGCCGAGGTTGATCAAGCTAAAGACGAGCGGTCAAAAATCCCTCCACACAACAAGGAAATCATCCCAGagtttgtGTTCTCTCTGGATGCCACTGACGAGTTCCTGGAGGAACGTGTGCTGAACCTGCCTGAGAATGTGGTGCAGGGAACGTCACACTCCGTGGAGAAGTACTTTCCGCGTCTGGCCACGTTCAGAAAAAACAATTCAGAGGATGAAGCTGTGCTGAAATACTTTGAAGAGCTGCTGATTCACCCTGAGCATATAGAGATTAATAGTGATGACTTGGAGAATGTCCTGGTAATGGAGAAGGTGATGGAGAGTGTGGGGAAGGCCAGGAACTATGGCCCCACTGCAAAGGATTTGGAGGAAGAGCGGAGGCAGGTGGAGATCAGATTGATGGAGAAGGAGGAGGCGCGTCAGGCTGAAGCCAAGCGCaggaaggaagaagaggagcagTGGGCACAGCAGCAGGAGGAATGGaaccGATGTCTGGATGAAGAGAGGCGACAGGAAGAGGCGCTGTTGATGGCAGAATCAGCTCCTCTCAGGCAATATTTGATGAACAGCGTGTTGCCCACCGTGATTCGAGGCTGCCTCGAGATCTGTGAGCTCCGACCAGATGATCCGATACATTTCCTGGCTGAATATCTCCTGAAAAACAATCCAGAAGTGCAACAAAACCCACCTGCATATGAAGATGAACCTCAAAACTGCGAGTCTGTGGGAACTTTTCAGGCCTTATtatttcagcGATAAGCTACAGAACAGAAGGTGTGTATTATTCTCTATCATTCACTGTTGCAGATCTGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308237.1 True 2262 mRNA 0.46 19 26312809 26321625

Neighbor

gene id symbol gene type direction distance location
cx52.7 LOC108269563 coding downstream 632068 25679314 ~ 25680741 (-)
manea LOC108270006 coding downstream 642834 25664338 ~ 25669975 (-)
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding downstream 652154 25651808 ~ 25660655 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding downstream 672588 25634727 ~ 25640221 (-)
si:ch211-266g18.9 LOC108270005 coding downstream 678926 25620016 ~ 25633883 (-)
si:dkey-288a3.2 LOC108270389 coding upstream 41441 26363066 ~ 26403989 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding upstream 419749 26741374 ~ 26794919 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding upstream 497275 26818900 ~ 26845135 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 525221 26846846 ~ 26898308 (-)
ism2a ism2,LOC108413947,LOC107583490 coding upstream 608036 26929661 ~ 26955838 (-)
G171874 NA non-coding downstream 254300 26058245 ~ 26058509 (-)
G171864 NA non-coding downstream 334782 25977796 ~ 25978027 (-)
G171755 NA non-coding downstream 533843 25773504 ~ 25778966 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 803189 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 842735 25469504 ~ 25470074 (-)
G172016 NA non-coding upstream 273656 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 450507 26772132 ~ 26773050 (-)
G172207 NA non-coding upstream 507693 26829318 ~ 26829729 (-)
G172211 NA non-coding upstream 548722 26870347 ~ 26870619 (-)
G172212 NA non-coding upstream 573143 26894768 ~ 26959616 (-)
G171734 NA other downstream 730282 25578939 ~ 25582527 (-)
G171569 NA other downstream 1053447 25258839 ~ 25259362 (-)
G171256 NA other downstream 1386585 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1768730 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3133298 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1243633 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 1349998 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1577857 27899482 ~ 27910890 (-)
G172919 NA other upstream 1590612 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 2476524 28798149 ~ 28860011 (-)

Expression


Co-expression Network