sptlc2a (sptlc2)


Basic Information

Item Value
gene id sptlc2a
gene name sptlc2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26959823 ~ 26989620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308244.1
ATGACCGAGAGCGCGGTGAACAAGGAGGCGAACGGGGATGTGTGTCAGCACCGGGCGGTGAGCGGCGTGAGAGCGGGAAGAAGCAGCGCGCTGAAGGATCAGCACTGTCACCAGGAAAAGCACAGGTCCTTTCCCAAACATGACGACAAGCTGCACCAGAGCGAGTGTAATGGAGGCTTATACAGCAAGCCGTTCATCGAGTCGTTTGAAGAAACCCCGATGCTGGTGGCCGTGCTCACCTACATGGGCTACGGCATCCTCACCATCTTCGGCTACCTGAGAGACTTCCTCCGCCAGTGGAAGATCGAAAAGTGCCACATCgctagagaaagagaggaacaaAAGGATTTTGTTCCACTTTATCAAGACTTTGAGAATTTCTACACCCGAAATTTATATATGAGGATCCGGGACAGCTGGAACAGGCCCATATGCAGCGTGCCTGGGGACAAGATGGACCTGGTGGAGCGAGTGTCACATGACTACAACTGGACCTTCAGCTACACCGGCCGAGTGGTGAAAGACGTGATCAACATGGGCTCGTATAATTACCTGGGCTTCGCCAAGAACACGGGCTCGTGCGCCGACGCGGCGGCGGACGCCACTCTGAAATACGGCGTCGGCGTGAGCAGCACCAGGCAGGAGATGGGTAACCTGGACATGCATGAGGAGATGGAGAAGCTGGTAGCGAGGTTCCTGGGCGTGGAGTCGGCCATGGCGTTCGGGATGGGTTTCGCAACCAATTCCATGAACATTCCAGCCCTGACTGGCAAGgGGTGTCTGATTCTGAGCGATGAACTGAACCACGCCTCTCTAGTTTTAGGAGCGCGTTTATCTGGCTCCACCATCCGGGTTTTCAAGCACAACAACATGCAGAGCCTGGAGAAGCTGCTCAGAGACGCTATAGTGCACGGCCAGCCCAGAACCCACCGGCCCTGGAAGAAGATCCTCATAGTGGTGGAGGGCATCTATAGCATGGAGGGCTCCATCGTACGCCTGCCTGAAGTCATCGCCCTGAAGAAGAAGTATAAAGCCTACCTGTACCTGGACGAGGCTCACAGCATCGGCGCTCTGGGGTCCCGCGGTAGGGGCGTGGTCGACTACTTCAACCTCGACCCCACAGACGTGGACATCATGATGGGAACGTTCACCAAGAGCTTCGGCGCAGCGGGGGGTTACATCGGCGGGAGAAAGGAGTTGATAGATTACCTGCGCTCTCATTCTCACAGTGCCGTGTACGCCACCTCCATGTCGCCTCCCGTTGTGGAGCAAATTATCACTTCTAtgaagtgcattatgggagaGGACGGGACCACGATAGGCAGGGATCGCATCCAGCAGCTGGCGGAAAACACAAACTACTTCCGCAGGAGGCTGAGGGAGATGGGCTTCATCATCTACGGCAACAATGATTCACCTGTAGTTCCCATGATGCTCTACATGCCCGCCAAAATCGGGGCGTTTGGTCGGGAGATGCTGAAGAGGAACATAGGTGTGGTTGTCGTGGGCTTCCCTGCCACGCCCATCATCGAGTCCAGAGCTCGCTTCTGCGTGTCTGCGGCTCACACCAAAGAAACACTGGACACGgccctGAGTGCGATCAGCGAGGTGGGAGACCTGCTGCAGGTGAAATACTCGCGCCACAGAATCCTCCCGTCTCTCGATCGGCCCTATGACGAGACCACATACGAGGAGTGTGAAGACTGAACACCTTCCAGCCTCGATGGAAACGTGCACTGCTCTCTGTCCTTCCACAAGCTTCACTGAACCACTTAATACATGTCgtctttttaatttcatcatgaTTTTGTGAAGAACATGGAGCTCCTATTATACGgcttgctttctctttctttctttctttctctctctctgtcagttctCATCCATCACTTTGACATTCAAGATCTGTCCTTAACTCATTGTGACATTTATTTGAGGgcgaaaacaaaaaaaaaatgctttaattccTCGCTGCCAACCACAAGATGCTTTGGACTGCT

Function

symbol description
sptlc2 Contributes to serine C-palmitoyltransferase activity. Acts upstream of or within ceramide biosynthetic process and positive regulation of lipophagy. Part of serine C-palmitoyltransferase complex. Implicated in hereditary sensory and autonomic neuropathy type 1C.

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308244.1 True 2003 mRNA 0.54 12 26959823 26989620

Neighbor

gene id symbol gene type direction distance location
ism2a ism2,LOC108413947,LOC107583490 coding downstream 3985 26929661 ~ 26955838 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding downstream 61515 26846846 ~ 26898308 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding downstream 114688 26818900 ~ 26845135 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 164904 26741374 ~ 26794919 (-)
si:dkey-288a3.2 LOC108270389 coding downstream 555834 26363066 ~ 26403989 (-)
alkbh1 alkbh1 coding upstream 8811 26998431 ~ 27003962 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 493261 27482881 ~ 27489113 (-)
ston2 ston2 coding upstream 539243 27528863 ~ 27557994 (-)
kif13ba kif13b,LOC107583481,LOC107755780 coding upstream 804800 27794420 ~ 27842196 (-)
znf395a LOC108270040 coding upstream 893379 27882999 ~ 27892310 (-)
G172212 NA non-coding downstream 207 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding downstream 39286 26916818 ~ 26920537 (-)
G172211 NA non-coding downstream 89204 26870347 ~ 26870619 (-)
G172207 NA non-coding downstream 130094 26829318 ~ 26829729 (-)
G172196 NA non-coding downstream 186773 26772132 ~ 26773050 (-)
G172635 nrxn3 non-coding upstream 476252 27465872 ~ 27491804 (-)
LOC117598276 NA non-coding upstream 774985 27764605 ~ 27768101 (-)
G172782 NA non-coding upstream 797702 27787322 ~ 27787728 (-)
G172784 NA non-coding upstream 843912 27833532 ~ 27834840 (-)
G172925 NA non-coding upstream 944361 27933981 ~ 27936828 (-)
G171734 NA other downstream 1377296 25578939 ~ 25582527 (-)
G171569 NA other downstream 1700461 25258839 ~ 25259362 (-)
G171256 NA other downstream 2033599 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2415744 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3780312 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 575638 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 682003 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 909862 27899482 ~ 27910890 (-)
G172919 NA other upstream 922617 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1808529 28798149 ~ 28860011 (-)

Expression


Co-expression Network