LOC117598320


Basic Information

Item Value
gene id LOC117598320
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28441002 ~ 28477245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308247.1
ATGGAGAGCAGCTGCAGAGCCGCAGGGTCTCTGGATGGAGAAACGCTCATCACAGGAGagttTTTTACAACTTCTACTACAGCCTCCACTACAGCCTCCACTACAACCTCCAATAGAGCCTCCACTAGAGCCTCCACTACAGTCTCCACTACAACCTCCACTACAGTCTCCACTACAGTCTCCACTACAACCTCCACTACAGTCTCCACTACTGTCTCCACTACAACCTCCACTACAGTCTCCACTACAACCTCCACTACAGTCTCCACTACAACCTCCACTACAGCCTCCACTACAGTCTCCACTACAGTCTCCACTACAGTCTCCACTACAGCCTCCACTACAGCCTCCACTACAGTCTCCACTACAGCCTCCACTACAGCCTCCACTACAGTCTCCACTAGAACCTCCACTACAGCCTCCACTACAGCCTCCACTACAACCTCCACTACAGTCTCCACTACAACCTCCACTACAGCCTCCACTACAACCTCCACTACAGCCTCCACTACAACCTCCACTACAGCCTCCACTACAGTCTCCACTACAGTCTCCACTACAGCCTCCACTACAGCCTCCACTACAGTCTCCACTACAACCTCCACTACAGTCTCCACTACAGTCTCCACTACAGCCTCCACTACAGCCTCCACTAGAACCTCCACTACAGCCTTCACTACAGTCTCCACTACAACCTCCACTACAGTCTCCACTACAGTCTCCACTAGAACCTCCACTACAGCCTCCACTACAACCTCCACTACAGTCTCCACTACAGTCTCCACTACAACCTCCACTACAGCCTCCACTACAGTCTCCACTACAGCCTCCACTAGAACCTCCACTACAACCTCCACTACAGTCTCCACTAGAACCTCCACTACAGCCTCCACTACAGCCTCCACTACAACCTCCACTACAGTCTCCACTACAGCCTCCACTACAACCTCCACTACAGCCTCCACTACAGTCTCCACTACAATCTCCACTACAACCTCCACTATCTCCACTACAACCTCCACTAGAGCCTCCACTACAGCCTCCACTACAACCTCCACTACAGCCTCCACTACAGTCTCCACTACAGTCTCCACTACAACCTCCACTACAGTCTCCACTACAGTCTCCACTAGAACCTCCACTACAGCCTCCACTACAGTCTCCACTACAGCCTCCACTACAGTCTCCACTACAGTCTCCACTACAGCCTCCACTACAGCCTCCACTAGAACCTCCACTACAGCCTCCACTACAGCCTCCACTACATACCACagcttcctcttcttcttccacaCAGCTTCGCCTCCGGAGGGAAGCGTAAAACAAGGCCAGCGTGGTGCGAGAGCTGAAGTTTGACTCGTCTCTAACGATCGTGGACTGAAACTCTCGTTAAAATGTAACAGAACGAGGTCTTGACGAGACGAGTCCGGTGTGAATTGGTCTTCTTCACTGACACGTAGCACAGACTTTCAGAAGTTCTTCAGCCTTTGATCCACAATTTGTGCAGAGGGGTTTGATGAAATATCGCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308247.1 True 1532 mRNA 0.52 4 28441002 28477245

Neighbor

gene id symbol gene type direction distance location
jkamp jkamp,LOC107693092,LOC107564966,LOC107751812 coding upstream 215348 28217692 ~ 28225654 (+)
daam1a daam1,daam1a,LOC108269704,LOC107725326,LOC107751774,LOC107693144,LOC107679992 coding upstream 232140 28181100 ~ 28208862 (+)
sdsl sdsl,LOC108413229 coding upstream 270439 28166153 ~ 28170563 (+)
ppp1r13ba LOC108269703 coding upstream 275348 28128719 ~ 28165654 (+)
ptp4a2a ptp4a2a,LOC108269715,LOC107680006,LOC107564961,LOC108413228,LOC107583452 coding upstream 313149 28123003 ~ 28127853 (+)
ctage5 ctage5 coding downstream 217733 28694978 ~ 28716687 (+)
fam177a1 fam177a1 coding downstream 253184 28730429 ~ 28735890 (+)
prorp kiaa0391 coding downstream 264807 28742052 ~ 28759394 (+)
psma6a psma6,psma6a,LOC107729267,LOC107586679,LOC103457804,LOC107725920 coding downstream 282620 28759865 ~ 28764015 (+)
LOC113533718 insm2 coding downstream 315594 28792839 ~ 28796775 (+)
LOC117598375 NA non-coding upstream 5604 28389196 ~ 28435398 (+)
LOC113534053 NA non-coding upstream 196276 28236673 ~ 28244726 (+)
G172873 NA non-coding upstream 249090 28148577 ~ 28191912 (+)
G172830 NA non-coding upstream 318170 28119062 ~ 28122832 (+)
G172858 NA non-coding upstream 332337 28101507 ~ 28108665 (+)
G173106 NA non-coding downstream 54214 28531459 ~ 28531691 (+)
G173140 nfkbia non-coding downstream 292780 28770025 ~ 28772065 (+)
G173143 NA non-coding downstream 320922 28798167 ~ 28807149 (+)
G173154 ralgapa1,LOC108414275,LOC107729238,LOC107589631,LOC107586611 non-coding downstream 343255 28820500 ~ 28825365 (+)
G173156 NA non-coding downstream 355101 28832346 ~ 28864098 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other upstream 369921 28028000 ~ 28071081 (+)
trnak-uuu_7 NA other upstream 715723 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 973436 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 3010073 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 3122725 25258811 ~ 25318277 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 384217 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 576988 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 592475 29069720 ~ 29073089 (+)
nrde2 NA other downstream 616219 29093464 ~ 29138776 (+)

Expression


Co-expression Network