hmbox1a (LOC108270414,LOC108437743,LOC107751802)


Basic Information

Item Value
gene id hmbox1a
gene name LOC108270414,LOC108437743,LOC107751802
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27781468 ~ 27793212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308269.1
TCTACTGTTCATATCAATATGGCTTCTGTCAGTCACACAAAGGCAAATGATATTTTGCTGTGAAATGCGGGTTTGGTGATTAAAGAGGAAggcagggagagggagagagagactcgGAAGGAGGCTGTAGGACATGTCGCTGTGTGGTTGCTGACAGAGGGACTTTAACGACGCCTTTTGCTCCGGGACCAAAATTActgctaaataaattaaatgttatggTGGACGGAGGCCCAGCTGAAGAATGTCACATTACACCGACGAGCCTCGCTTCACCATCGAGCAGATCGATTTGCTGCAGCGGCTGCGCGGGAGCGGCATGACCAAGCAGGAGATCCTGCATGCGCTGGACACACTGGAGCGTCTGGAGCGCGAGCACGTGCAGAAGTTCGGCCTGCGCCACTCCTACGCGGGAGGGacgagaggaggaggaggaggcgtcaGCAGCCACGGCAGCTCCAATTCTGCCGCTCCGTCCAGCACCGCTCCCACTTCGTCCTCATCCGCCTCCGTGGCTACTCAGACCGTTTTCCACGGAGGCACTCCATCCCCGTCTCCAACCAGCTACGACACCTCTCCGCCCCCCATCACTGTGCCCATGGGCGTGGTGGCGCCAGCGGCTCAGAACGGCCGTGACGGCTTGGCGTCTGTCAGTAATGGGAAGCTCTCGCCTCCCCAGTACCCCGTACCCACTCGGGCCTTTGGCTTCGAGCCCGCTGAGGAGGAAGTGGACATCGATGACCGGGTGGAGGAGCTCATGAGAAAGGACAGTAACATAATTAAAGAGGAGATCAAGGCCTTCTTAGGGAGCCGGAGAATTTCACAAGCCGTCGTCGCCCAAGTCACAGGCATCAGTCAGAGTCGGATCTCCCACTGGCTCCTGCAGCAGGGTTCCGATCTGAGCGAGCAGAAGAAGAGAGCCTTCTACCGGTGGTACCAGCTGGAGAAGACCACGCCCGGCGCCACTCTGGCTATGAGACCCGCCCCCATGGCGCTGGAGGACATCGTAGAGTGGCACCAGAGCGCTCCGCCCATCAACTGCAGCCCCGGGAGCTTCCGTCTGCGCCGCGGCAGCCGCTTCACCTGGAGGAAAGAGTGTCTGGCTGTCATGGAGAGTTACTTTAACGACAACCAGTATCCCGACGAGGCCAAGCGGGAGGAAATCGCCAACGCCTGCAATGCTGTGATACAAAACCAAGGAAAGAAGCTTTCTGATCTAGAGCGGGTCACGTCTCTAAAAGTGTACAACTGGTTTGCTAACCGACGAAAGGAGATTAAGAGAAGAGCCAATATAGCAATCCTGGAGACTCATGGGATCGATGTGCAGAGTCCAGGCGGTCACTCCAACAGCGACGAGATCGACGGTAATGACTTCAGTGAGCCGGGCGCAGAGCCGGGGTTAGGGACGGACGAGAGCACGGGACCGAGCGAGCACCAGGACCCCATCAGCCTGGCGGTGGAGATGGCGGCGGTCAATCACTCCATCCTGGCGCTGTCGCAGCAGGGCAGGGGCGGCAACGACGTCAAGGCCGAGGTGCTCGATGATGACTGAGGActcttcccacacacacacacacacacacacatacacacacacactttcacacatacacaccgtcACATTTACACTGTATCTGCCAAAGGAGGAGACGGTGCTGGGGTGAGGAGGTGGGGAGTGATGTGACTTTAAGACTCGCTAGTTTTGCTAGTTTTTCAACTCAACCTCATGCATTGCCTTTCAATTTAAGCATTTTAATAACCGCATATGTTCAAActgaatgtaatatttttgggAATATTAAGCATTTAATTACTTCCGTTTATGCATCTAAGCTGTTCTGTTTAGTCCTCCTTTTCTTTGAAAGCCTTGTGGGAAACTAAAACTCTTAAATACATGCTAGTCATGCTAGTTCAATTCCTCAGGCCTTCGTGAACAAACAAAGCCATTCATTTGGGAAAAGGGAAAATGCTCTGTCGTGACTCATGACCAGAGCTGAAGAGGAGTCAGTTAATCTCACAAGTAAAATTTAAACAGAGGTTCTGTGAAGTAGAAATGCACTACTGGTCGAATTTGTGCATTAAAATCAcaaaagttttcctttaaaggagcggtttgtcattttcagccCCCTGTGAATTAAATTACAGTTGCAGTGAAAACATTGACGCATCTCCCATTTGCTCCGCACTGACTCCACCCCCTTTATTGAAACCTTTTAGGGAAAAAGGACAGTTGGAGGCGGAGCTAATTTCCAGGccagaaatatttaaacacaagtCTGACATGCAGAAACTGGAGAAATTCATGGCAGTGTTGCAATTCAGGTTTTCTTCTCTTTAAAGTTAGatgattattacattattacgtATTACATTCGATGATTATTACAAAGACTAATTAAAAAATGGCACCTTTTACGGCTGAGAAATGAAATTTGCAATTTCTAGTGCGTCGCAGATTTCTGGTGCGAATAAAAGttctaattaataataaatttagctaattttatactgtatgtaatattttcTGACCTGACAAATtattctatattaaaaaaaagaggtgtgGGATGCAGCTCGTCAGGAGGcgggattagattagattagattagatagtGTAACTATCTTACTtctgtgtttttactttttatgttGGGCGAGTTGACTATCAGCTCAGACAGGTTAGCAAGCAAAGTCGATTGACAAGGTAAAAGCGAAGGTAAAAAGATGTACAAGTGTTTGCGTTTTCGTCACAATTGCTTTAGCACTCCtaaaataatttagaaaatgatcaacttAGCATAAAAAGAATTCATCTGTGACCATGAAGACAAACGCTGAGTCACAGCGATATTGCTATTTGAACcattctgaaataaaatggaggactttttttcccctccaaacTTTAAGTCCCATTTCACACACCTAGTGTGACTTCACCTTTATTAGAACattttttgattaaaaagtgtCACTCCTCCACACGGTTTTCCTTCTCTGGAGGGATGTAAAACCctctgctatctctctctccgtctcctcCTCTGTAAGAAAACACTGATTTACATCACTTCCTGGCCTGAAGTAGTGGCCTCTTGCCGTCTAGCTGCCTGTAAACATGAATCTCCTCAGTAGTAAGATGTGGTCCTGAGATCACATGAGCCTTATCAATGATCACatgcttcatcatcatcatcatcatcatcatcatcatcatcatcaacactcGCCCAGGGTTTGCTACACGTCTTTAGGCTTCTTTAAAAGCAATCGGACAAATGCTGTTAACCGTACCATGTGTAACCTCATAGTATTCCGTATCAGGGTGCTGTACTGAACTCTGCAGTGTGTCGGGTTTAACACCGAGGCCCTGATTTACTGAGAATAACGCACGTAAAATGTGGGCGTGGTTTTACAGGTAGAAAACAATATGTAAATTACGTCTATACGTCTACCGTAAGGTCaaataaaaactgtacaaattattAACACAAATTAATTGTTCTGTTCATAGGGTACATTCTGTACTctttatcttttgtacctttaatatgtgtTTTCTCGTTACATGTAGTGGACATGCTCTCAGAGTGGGAGGGGCTTACTGTCTTCTCCTGTCAATCACGacgacactagccaatcctgggcgtctgtgagatcatgtattaggaagagggtggatagcgtTTTCAGAAAGatgcatattaaaggtacaaacaGTATACGCTTGATTCTTCAACCCCTGTGAATAGGAATGGTACAGttcagtacagttttttttttttccagagagtGTAGAGTGACTAAAAACCGTTTCACAGCCTCTATTTAAACACTGGTGTCACGGTTTTTAAAACAATGCCACGGTTATACTCTATAACCATGTAACAAGCTTCTTAATCATTCTGAGAttgttaaagatttttattgtaaaaaccTAGTGTACGGTCTAAATTTACCTGTCAAACGGAattctgcaaatttaatacctgccgtCCGGTTGTATTAATGAAAGCCGCTCCTGAAGTGGCTTTCGGGTTTAATAAATCACACTGTAGGTGCTAAATTAATCTGTTTGCATCGAGTCCTCTCTGCACTTGCACATAGAAATGGCCCAAAACGCAATATTActgaagacaaacacacacaaccgatcatttgttcatttgaaaGTCGCAATCAGGTTGtgcgttttttgttttttttttatacacacgcAAACcttttagtaaatcagggcctgaCTCTGTAGAAGCATCGAGTAGCGCTCGGACTGGAGGATGGACGCAGGCGAATGTTCAGAGTGTGTACAGACAGTGCGTGCAAACACGGCAACGTAACATTTTAAGGCCCATAAATAACTTCAGTCCACATTTCTCAGTTAAGATGGTTTGAACAGTTTCATCCAAACTGCAGTGGAATTTACCAATAAAAGGAAAACGTTTGGCCAAAAACATCATTCTTGGCTGATCCAGGgttagtgtgtaaatgtaatttctgACCAATTTCAATGTGAAATGCAGCCACAATCAGAGATAAGCTTTCAATTTAGCGTTTATAACGAGATTGAATGAACTCCGGAAATGTTAAAATTCAGTTTTCAACTTGGAAGTAAAATTGTGGAagtgaaaaaatgcaaaacacacagctggAATGTTCACCAGTTAGGACTAAGCTAAATGTGTTGGAATTTTCTCTTTCATAATCCTCGATTTCAGGAAATAATTTCAGTTCTGCtatttgtatttgcatattattttctttgcgTGTTCCTCTGGAGTGTAAAGCTCCCTAAAATTTCGCActtttttcttatctttaattCGGAAAGCATATTTCACTTTAGGGTTCAAATGTGAAATCAAAAAGTGGCATTTGACAATCTTTAATTTTCTCGAGATCACACTCAGtgttccacttttttttttgtgtgtttcagcttcAGCTGATGTTTCACTGcacttaatatttatttcagtacaTTTGAAGTCGTTAGCTCTCGTCAGCTCAAGTCTGACATCCTTGACCTCGGATAGTAATCCCTTTATTCATGATCAGTCGAACGTCtagctgtttttgtgtttgtatcacaatccactctttactgatgatgtccAGAGAGGAACCCAAATGGTACCAGAACCCAAATCCTCCGATCAGGGTGGACGAGCAGTCAGCAGTTTCTGTTTGACGGGAAATCAGGAGCTTGACTGTCCTGTCAATCTGTTTAATAtgtgaatatattaaaaatatatataaatataaatattatatgacGCAAATACTGTTGTATCAACTACAAATAGTTAAATCCTGTAACTCCTATTTCAGAATTTAGTGCCTTTTTTTGGACAGTAGACTGTTCAGTAATTAATATGTAGTATATGTATGCTTTATGActtttttaagactttttttttaaacctgtgttTATTTTAGTACTGTATCTTCTAGAGAATAAAGTCTAAATCAATGACAA

Function

NR:

description
PREDICTED: homeobox-containing protein 1-like isoform X1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308269.1 True 5482 mRNA 0.44 9 27781468 27793212

Neighbor

gene id symbol gene type direction distance location
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding upstream 8392 27768268 ~ 27773076 (+)
tdp1 tdp1,LOC102776284 coding upstream 20602 27726878 ~ 27760866 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding upstream 655563 27007934 ~ 27125905 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding upstream 774719 27004109 ~ 27006749 (+)
trnat-ugu_12 NA coding upstream 866038 26915358 ~ 26915430 (+)
pnoca LOC108270041 coding downstream 75028 27868240 ~ 27881903 (+)
map7a LOC108270039 coding downstream 121192 27914404 ~ 27927660 (+)
scaf8 scaf8,LOC107749595,LOC107675315,LOC107572866,LOC107728963 coding downstream 137962 27931174 ~ 27963120 (+)
tiam2a tiam2 coding downstream 169208 27962420 ~ 28056561 (+)
ptp4a2a ptp4a2a,LOC108269715,LOC107680006,LOC107564961,LOC108413228,LOC107583452 coding downstream 329791 28123003 ~ 28127853 (+)
G172414 NA non-coding upstream 107988 27581718 ~ 27673480 (+)
G172422 foxn3,LOC107680774,LOC107751738,LOC107755777 non-coding upstream 129304 27622473 ~ 27652164 (+)
G172408 NA non-coding upstream 145107 27633932 ~ 27636361 (+)
G172405 foxn3 non-coding upstream 212829 27565306 ~ 27568639 (+)
LOC113533960 NA non-coding upstream 250105 27494902 ~ 27531363 (+)
G172719 NA non-coding downstream 1170 27794382 ~ 27799180 (+)
G172741 NA non-coding downstream 47774 27840986 ~ 27842183 (+)
G172858 NA non-coding downstream 308295 28101507 ~ 28108665 (+)
G172830 NA non-coding downstream 325850 28119062 ~ 28122832 (+)
G172873 NA non-coding downstream 355365 28148577 ~ 28191912 (+)
trnak-uuu_7 NA other upstream 56189 27725207 ~ 27725279 (+)
nrxn3a nrxn3,LOC107583487 other upstream 313902 27156343 ~ 27467566 (+)
LOC113534148 NA other upstream 2350539 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 2463191 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 2603571 25176374 ~ 25177897 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 234788 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1068250 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 1261021 29054233 ~ 29138878 (+)
G173221 mrpl57 other downstream 1276508 29069720 ~ 29073089 (+)
nrde2 NA other downstream 1300252 29093464 ~ 29138776 (+)

Expression


Co-expression Network