setd3 (setd3,LOC107588283,LOC107583493,LOC107668608)


Basic Information

Item Value
gene id setd3
gene name setd3,LOC107588283,LOC107583493,LOC107668608
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26818900 ~ 26845135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308270.1
AGCCAATCGAATTCTTAGAAAAGCTGTTGGACTCGAGAGAGCGAGTTGTAGGGTTTGGTTGCGCCCAGCTAGCAAGTGGGAGAAGACTGACAGCAGGAGCTTTTTGGATTCATTTGAGAAGGAATCTTCCCTCGTAACCGAGCCAGACGATGGGTAAGAAGAGTCGCGTGAAGACTCAGAAATCGGGGACAGGCGGGACAGCCGTGGTGTCCCCTAAAGAGATGATGAACCTGATCTCCGAGCTCCTACAGAaatgcagtggTGCAGCTCCGTCTCCAGGAAAGGAGTGGGAGGAGTACATCCAGATCCGCACCCTGGTGGAGAAAATCCGCAAGAAACAGAAAGGAGTGTCCGTGGTGTTTGAGGGCAGCAGGGAGGATTATTTCCCCGAGCTCATGGCCTGGGCAGCAGAATGTGGAGCGTCCTGCGAGGGCTTCGAGATCGCCAACTTTGGAGATGAAGGATACGGCCTCAGAGCCACCAAAGAcatcaagGCTGAAGAACTGTTTCTGTGGATTCCCAGGAAGATGCTGATGACCGTGGAATCGGCTAAAAACTCCATTCTTGGTCCGCTGTACGGTCAGGACCGGATCCTGCAGGCCATGGGCAACGTGACTCTGGCCCTGCACCTGCTCTGTGAGAGGGCGAACCCGGAGTCCCCCTGGCTGCCCTACATCAAAACCCTGCCCACTCACTACGACACGCCTTTATACTttgaggaggaggaagtgcgCCACCTGCTGGCCACTCAGGCCATTCAGGACATGCTGAGCCAGTACAAGAACACGGCGCGCCAGTACGCCTACTTCTACAAAGTCATCCATACTCATCCCAACGCCAGCAAACTGCCCCTGAAGGATGCTTTCACCTTTGACGACTACAGgtgggccGTATCATCTGTGATGACTCGTCAGAACCAGATCCCTACAGAGGATGGCAGTCGGGTCACCCTGGCTCTCATCCCACTCTGGGACATGTGTAATCACACCAATGGCCtgATTACGACCGGTTACAACCTGGAAGATGACCGATGTGAGTGTGTTGCTCTGCATGACTATAAAGAGAGCGAGCAGatctACATATTCTACGGTACAAGGTCTAACGCTGAGTTCGTCATCCACAACGGCTTCTTCTTCGAGGAAAACGCACACGACCGGGTGAAGATCAAGCTGGGAGTCAGTAAGAGCGAGAGGCTGTACGCCATGAAGGCCGAGGTGCTGGCCCGCGCTGGAATCCCGGCGTCAAGCGTTTTCGCATTGCACTGCAGTGAGCCGCCCATTTCAGCCCAGCTCCTGGCCTTCCTGCGCGTCTTCTGCATGACGGAAGAGGAACTCAGGGACTACCTAGTGGGTGACCACGCCATCAACAAGATCTTCACGCTGGGGAACGCAGAGTTCCCTGTCAGCTGGGAGAACGAGATCAAGCTGTGGACGTTCCTGGAGACGAGAGCTGCGCTGCTCCTCAAGACGTACAAAACCACATCAGAGgaggaCAGGTCCATGCTGCAGAAACCCGACCTCTCTCCACACTCGCGCATGGCCATAAAGCTGCGTCTGGCTGAGAAGGAGATCCTGGAGCGCGCCGAGGCCAGCGGCCGTGCCAAGCGCCTGCACTTCCAGAAGCAGCTGGATGACGGCGCTCCTCTGCCCGTGTATGAGGAGAGCGACATCGCGCTGCTGGAGAACGCCGACGCCAAGCTGCCCATCGTCCTGCACCAGCTAGAGGAGGAACAAGAGGAAGAAGAGCTGAAGATGTCGCTTCTTAACGGTGAACGAAAGGAGAAAGAGATACAGAAGGAGACCGGAGGAGAGAAAGCAGAGTCGAGCGCGCAAAGAACTGAGGATACAGGCAAAGATCAGGAATAAGTTCGACACAATCACGGATTCCTgctccttatttattttttgttttaagtgACTGAAGAATAGAAGTGAAAGCAATCGAAACTAAAACAGCAGTCTGTGTTacttacagcttttttttttgttttttttttttaatatagatgTGACGATTTCAGATGATGTTCTGCTGTTCCGTCCCACGTTTTAGTTTTAACAGTGCCACactggtttatatatatatatttttttgtttatttgaagcAGGTGGCTCCTCCCACTCAGGAGGAAAAAGACttggaaaactgaaaactgtaTGTAATGGAACGTCATAATCGGACCTGTGGATCTGATGTACAGATCTGGAGTTCAGTTTGTTCAGGATTCAGTATGACCtggttaactttttttttttttttttttttttttgcgtgttTTTGTTGCtcctacagtttttttttttaaaaaacatacacagtgtTTCCCTTTACCTGAAATGTAGCATGTTTAGTGCTTGGAGCAATGAGGCTAGCTTGTATCTTATGAGGTTAGCACTGCGCAGTATACTCGCGTTATGTTTGGGGGGTGGGGTTAGTAATGTTTACGGCTGCACGCAATGTGAAATGCaacagcagagaaaacacaTGCTGTAGATTATTACGAAACTCTTTAATAACAAGTTCAAACTCCATCTTTAAGCTACTTAAtcttgtttaaataaataaattagtttaaaGTTTCGtcaaattgaactgaaattttTATGGTTTAAGTGTATGGCAAAGTGGTCGATAAAACTCCACCCCAATCTGTGGGAGGCGGAGCCTAATCTCTAGTCATTTGTGTGCAGAATGATACCAAAAACGTTATTGTGGCTATCTAAGATGGCTGCTCCATTACATTAAGCTACGAATAAGTTCACAGTAGCTAGTGTGCGTCACTCCTAGCGAGTGTCAGTGATCTGGCCAGCTTTTAtcatcaaacaaatcaaaaataggatcacacactctctcaatacattaaaaatggtGATGCATTTTACTGCACTCGTTATTTTACTGAATAACCTGTTAATtgacacacatttacaattgccttctttttttttttttttttgttggctCAGAAGATTGACAGCTTCGCAAATTCATGGGTCAGGGTTCCCCTAGATAAAGTCTATGTACACTGTGTGAAACTAACCGCAAACACGCTTGCACGTTGTGCGTCTTTtccttgtgtatttttttccgCATTTTTCCCGACCATAGATTGATGGCTGAAAAGGCAGAAAAGcgtatttttaaatttgtcaaTAGAGCTAAACTGTATTGTGTCGTAACTTGTATTGCTTGTTTGCGACATTAGCCTTGCAGCGCAAGTTCAAAACTAATGACTCAAACGTCAAACACTAAACATGTCTTCGCTAATCATCTACATTTGGTATAAGTGAAAATTGTgtacgtttttcttttttcccatgaAACTATTACTTTACGCTTGTTCTGCTAATGTGTTTGCTAGACaatcgtttttctttttttacgtTCTGGATCCTGCTTTGCACCTGGATTAATCATATTACGCAAGGAGTCCTGGTCTTTTCAGCAGGACATTTATCCCAAAAAAGGAAGAAGCTGAGGATGTTTTAAGTTTGATTGCACTTCGGGAACAGTCACTATATTTTTCAAAAGTGGTCTATTTTTCAGTTTGGATTGTTTGACATACTGTGATTGAACCTTCCGAAGGTTAGAAGCTTGAGATTACTTTAGAATTACGGACAAGTCGTCTTGCTATGAATGTAGTTTGAAATGCTTCGTCATATTGAATAGAtctattcattaataatttccTCGTGACGGCTGTCTCGGTTGCTGAGAACGATAACTTCTTCCACGTTTATAATGTTGTTATCGGTTTGTTTACATCAGAAGCCAAACTCATCACATCTCTAATGTCTGTGGTTCTCTTTACGCCTTAAAACAGTTTCCTGTGCAGGATATCTGCAATCACAACACTTACAGGTTCCAAAACTAGGGTTTTTCTTATGGTTGTtctcattaataattttatatagtgCATCTCATGCATTTAAAACGCAGCTCAAATAGTGCTTTACGATAAATCTATAGAACAAATAgatacataattaaataaatatactgtactCAAAGTGAAACTGATTTTGTAAATTAGaggtaaaaagaaaatgctaaCAACTGTTTTGAAATAGTTGTGAAAGGACAAGGTTTGAGCTGCTTTTTAAACGATACAGCTGGAGCCTGATGAGTATTGATGGATCACAAATTCCAgatctttggaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagtctgcatcactgtttttcactttggGAAAGTTGAGTAAAGCGTGATTTGGATCACAGCCTGTCAGACATGCAGAGATGTATGGATAAGGTaagctttaaaaacaataaaagactTACTGAAACCTGA
>XM_034308271.1
AGTATGTTTTATGGATAAGAGAGAGGGAGTTTTATTTGAGCGGAATGAATCGTTTTGTGAATGACAGGACGTTTTGGGACAGAAATATGATGCTAACTCCCAGAGCTGCTGCATTAGACCAGGTGCCTGGAGCTGTATGAGATTAAAGGTGCTGTGGCTGGAAGGAATCTTCCCTCGTAACCGAGCCAGACGATGGGTAAGAAGAGTCGCGTGAAGACTCAGAAATCGGGGACAGGCGGGACAGCCGTGGTGTCCCCTAAAGAGATGATGAACCTGATCTCCGAGCTCCTACAGAaatgcagtggTGCAGCTCCGTCTCCAGGAAAGGAGTGGGAGGAGTACATCCAGATCCGCACCCTGGTGGAGAAAATCCGCAAGAAACAGAAAGGAGTGTCCGTGGTGTTTGAGGGCAGCAGGGAGGATTATTTCCCCGAGCTCATGGCCTGGGCAGCAGAATGTGGAGCGTCCTGCGAGGGCTTCGAGATCGCCAACTTTGGAGATGAAGGATACGGCCTCAGAGCCACCAAAGAcatcaagGCTGAAGAACTGTTTCTGTGGATTCCCAGGAAGATGCTGATGACCGTGGAATCGGCTAAAAACTCCATTCTTGGTCCGCTGTACGGTCAGGACCGGATCCTGCAGGCCATGGGCAACGTGACTCTGGCCCTGCACCTGCTCTGTGAGAGGGCGAACCCGGAGTCCCCCTGGCTGCCCTACATCAAAACCCTGCCCACTCACTACGACACGCCTTTATACTttgaggaggaggaagtgcgCCACCTGCTGGCCACTCAGGCCATTCAGGACATGCTGAGCCAGTACAAGAACACGGCGCGCCAGTACGCCTACTTCTACAAAGTCATCCATACTCATCCCAACGCCAGCAAACTGCCCCTGAAGGATGCTTTCACCTTTGACGACTACAGgtgggccGTATCATCTGTGATGACTCGTCAGAACCAGATCCCTACAGAGGATGGCAGTCGGGTCACCCTGGCTCTCATCCCACTCTGGGACATGTGTAATCACACCAATGGCCtgATTACGACCGGTTACAACCTGGAAGATGACCGATGTGAGTGTGTTGCTCTGCATGACTATAAAGAGAGCGAGCAGatctACATATTCTACGGTACAAGGTCTAACGCTGAGTTCGTCATCCACAACGGCTTCTTCTTCGAGGAAAACGCACACGACCGGGTGAAGATCAAGCTGGGAGTCAGTAAGAGCGAGAGGCTGTACGCCATGAAGGCCGAGGTGCTGGCCCGCGCTGGAATCCCGGCGTCAAGCGTTTTCGCATTGCACTGCAGTGAGCCGCCCATTTCAGCCCAGCTCCTGGCCTTCCTGCGCGTCTTCTGCATGACGGAAGAGGAACTCAGGGACTACCTAGTGGGTGACCACGCCATCAACAAGATCTTCACGCTGGGGAACGCAGAGTTCCCTGTCAGCTGGGAGAACGAGATCAAGCTGTGGACGTTCCTGGAGACGAGAGCTGCGCTGCTCCTCAAGACGTACAAAACCACATCAGAGgaggaCAGGTCCATGCTGCAGAAACCCGACCTCTCTCCACACTCGCGCATGGCCATAAAGCTGCGTCTGGCTGAGAAGGAGATCCTGGAGCGCGCCGAGGCCAGCGGCCGTGCCAAGCGCCTGCACTTCCAGAAGCAGCTGGATGACGGCGCTCCTCTGCCCGTGTATGAGGAGAGCGACATCGCGCTGCTGGAGAACGCCGACGCCAAGCTGCCCATCGTCCTGCACCAGCTAGAGGAGGAACAAGAGGAAGAAGAGCTGAAGATGTCGCTTCTTAACGGTGAACGAAAGGAGAAAGAGATACAGAAGGAGACCGGAGGAGAGAAAGCAGAGTCGAGCGCGCAAAGAACTGAGGATACAGGCAAAGATCAGGAATAAGTTCGACACAATCACGGATTCCTgctccttatttattttttgttttaagtgACTGAAGAATAGAAGTGAAAGCAATCGAAACTAAAACAGCAGTCTGTGTTacttacagcttttttttttgttttttttttttaatatagatgTGACGATTTCAGATGATGTTCTGCTGTTCCGTCCCACGTTTTAGTTTTAACAGTGCCACactggtttatatatatatatttttttgtttatttgaagcAGGTGGCTCCTCCCACTCAGGAGGAAAAAGACttggaaaactgaaaactgtaTGTAATGGAACGTCATAATCGGACCTGTGGATCTGATGTACAGATCTGGAGTTCAGTTTGTTCAGGATTCAGTATGACCtggttaactttttttttttttttttttttttttgcgtgttTTTGTTGCtcctacagtttttttttttaaaaaacatacacagtgtTTCCCTTTACCTGAAATGTAGCATGTTTAGTGCTTGGAGCAATGAGGCTAGCTTGTATCTTATGAGGTTAGCACTGCGCAGTATACTCGCGTTATGTTTGGGGGGTGGGGTTAGTAATGTTTACGGCTGCACGCAATGTGAAATGCaacagcagagaaaacacaTGCTGTAGATTATTACGAAACTCTTTAATAACAAGTTCAAACTCCATCTTTAAGCTACTTAAtcttgtttaaataaataaattagtttaaaGTTTCGtcaaattgaactgaaattttTATGGTTTAAGTGTATGGCAAAGTGGTCGATAAAACTCCACCCCAATCTGTGGGAGGCGGAGCCTAATCTCTAGTCATTTGTGTGCAGAATGATACCAAAAACGTTATTGTGGCTATCTAAGATGGCTGCTCCATTACATTAAGCTACGAATAAGTTCACAGTAGCTAGTGTGCGTCACTCCTAGCGAGTGTCAGTGATCTGGCCAGCTTTTAtcatcaaacaaatcaaaaataggatcacacactctctcaatacattaaaaatggtGATGCATTTTACTGCACTCGTTATTTTACTGAATAACCTGTTAATtgacacacatttacaattgccttctttttttttttttttttgttggctCAGAAGATTGACAGCTTCGCAAATTCATGGGTCAGGGTTCCCCTAGATAAAGTCTATGTACACTGTGTGAAACTAACCGCAAACACGCTTGCACGTTGTGCGTCTTTtccttgtgtatttttttccgCATTTTTCCCGACCATAGATTGATGGCTGAAAAGGCAGAAAAGcgtatttttaaatttgtcaaTAGAGCTAAACTGTATTGTGTCGTAACTTGTATTGCTTGTTTGCGACATTAGCCTTGCAGCGCAAGTTCAAAACTAATGACTCAAACGTCAAACACTAAACATGTCTTCGCTAATCATCTACATTTGGTATAAGTGAAAATTGTgtacgtttttcttttttcccatgaAACTATTACTTTACGCTTGTTCTGCTAATGTGTTTGCTAGACaatcgtttttctttttttacgtTCTGGATCCTGCTTTGCACCTGGATTAATCATATTACGCAAGGAGTCCTGGTCTTTTCAGCAGGACATTTATCCCAAAAAAGGAAGAAGCTGAGGATGTTTTAAGTTTGATTGCACTTCGGGAACAGTCACTATATTTTTCAAAAGTGGTCTATTTTTCAGTTTGGATTGTTTGACATACTGTGATTGAACCTTCCGAAGGTTAGAAGCTTGAGATTACTTTAGAATTACGGACAAGTCGTCTTGCTATGAATGTAGTTTGAAATGCTTCGTCATATTGAATAGAtctattcattaataatttccTCGTGACGGCTGTCTCGGTTGCTGAGAACGATAACTTCTTCCACGTTTATAATGTTGTTATCGGTTTGTTTACATCAGAAGCCAAACTCATCACATCTCTAATGTCTGTGGTTCTCTTTACGCCTTAAAACAGTTTCCTGTGCAGGATATCTGCAATCACAACACTTACAGGTTCCAAAACTAGGGTTTTTCTTATGGTTGTtctcattaataattttatatagtgCATCTCATGCATTTAAAACGCAGCTCAAATAGTGCTTTACGATAAATCTATAGAACAAATAgatacataattaaataaatatactgtactCAAAGTGAAACTGATTTTGTAAATTAGaggtaaaaagaaaatgctaaCAACTGTTTTGAAATAGTTGTGAAAGGACAAGGTTTGAGCTGCTTTTTAAACGATACAGCTGGAGCCTGATGAGTATTGATGGATCACAAATTCCAgatctttggaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagtctgcatcactgtttttcactttggGAAAGTTGAGTAAAGCGTGATTTGGATCACAGCCTGTCAGACATGCAGAGATGTATGGATAAGGTaagctttaaaaacaataaaagactTACTGAAACCTGA

Function

symbol description
setd3 Enables histone methyltransferase activity (H3-K36 specific) and transcription coactivator activity. Involved in peptidyl-lysine methylation and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Orthologous to human SETD3 (SET domain containing 3, actin histidine methyltransferase).

NR:

description
PREDICTED: histone-lysine N-methyltransferase setd3

GO:

id name namespace
GO:0010452 histone H3-K36 methylation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0018023 peptidyl-lysine trimethylation biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0005634 nucleus cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0046975 histone methyltransferase activity (H3-K36 specific) molecular_function

KEGG:

id description
K19199 SETD3; protein-histidine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308270.1 False 4319 mRNA 0.44 13 26818900 26845135
XM_034308271.1 True 4362 mRNA 0.44 13 26818900 26844995

Neighbor

gene id symbol gene type direction distance location
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding downstream 23981 26741374 ~ 26794919 (-)
si:dkey-288a3.2 LOC108270389 coding downstream 414911 26363066 ~ 26403989 (-)
LOC113534079 LOC108269777 coding downstream 497275 26312809 ~ 26321625 (-)
cx52.7 LOC108269563 coding downstream 1138159 25679314 ~ 25680741 (-)
manea LOC108270006 coding downstream 1148925 25664338 ~ 25669975 (-)
ccdc85ca ccdc85c,ccdc85ca,LOC107740595,LOC107668618,LOC107751728 coding upstream 1711 26846846 ~ 26898308 (-)
ism2a ism2,LOC108413947,LOC107583490 coding upstream 84526 26929661 ~ 26955838 (-)
sptlc2a sptlc2 coding upstream 114688 26959823 ~ 26989620 (-)
alkbh1 alkbh1 coding upstream 153296 26998431 ~ 27003962 (-)
dio2 dio2,LOC107588276,LOC107751736,LOC107680786 coding upstream 637746 27482881 ~ 27489113 (-)
G172196 NA non-coding downstream 45850 26772132 ~ 26773050 (-)
G172016 NA non-coding downstream 223417 26595281 ~ 26595483 (-)
G171874 NA non-coding downstream 760391 26058245 ~ 26058509 (-)
G171864 NA non-coding downstream 840873 25977796 ~ 25978027 (-)
G171755 NA non-coding downstream 1039934 25773504 ~ 25778966 (-)
G172211 NA non-coding upstream 25212 26870347 ~ 26870619 (-)
G172212 NA non-coding upstream 49633 26894768 ~ 26959616 (-)
LOC113534208 NA non-coding upstream 71683 26916818 ~ 26920537 (-)
G172225 NA non-coding upstream 133331 26978466 ~ 27052034 (-)
G172635 nrxn3 non-coding upstream 620737 27465872 ~ 27491804 (-)
G171734 NA other downstream 1236373 25578939 ~ 25582527 (-)
G171569 NA other downstream 1559538 25258839 ~ 25259362 (-)
G171256 NA other downstream 1892676 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 2274821 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 3639389 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 720123 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 826488 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 1054347 27899482 ~ 27910890 (-)
G172919 NA other upstream 1067102 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 1953014 28798149 ~ 28860011 (-)

Expression


Co-expression Network