LOC117598332


Basic Information

Item Value
gene id LOC117598332
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24286842 ~ 24291965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308286.1
ATAGCAGTGATCTGGCTTAAGTCggacaattaatttatttcttgctGTTTGTTAGTATGGATTTGACTGGAACTCAAAGAATATAGATTAAAGAATGGTGTAAACGGAATGGTCAGCTGGACTGGTGCTACAGACATATCCTACACTGCCTGTGGTCATTTGTTACACCTTTAACTGCATAGTCTCCGTGGACCTTCAGATGCAAGCCAGAGTGATTAAAGCCATGACAGCACTGGAGCTGAGGAGGTCAATGTGAATGGAACTATGAATAGCTGCTTGGGGGTTACTCTGAACGGATCAACTCAAACAGTCATCCCTCGCAAGCAAGAGTTTTTTCATGTACCTTACATCGCAGCTGAAGTAACGATATCCATTCTATCTACATCTGGAAATCTGTTGGTTTGCATTGCAGTGGGACGCAACAAGAAGCTCCAAACCGTCACCAACTACTTCTTGGTCTCTTTGGCAGCAGCTGATTTCTTTGTAGGCACACTGGCCATTCCCTGTGCTATTATGACAGACCTGGGTCTCCCCCACAATAATCTGTACCTGTGCACTACTATTGTGTACATGCTTATCACGCTAACCCAGAGCTCTGTCTTCAGCCTGTTAGCAATAGCCATTGAGCGCTATGTGGCGATCCTGTTGCCGTTCCACTACCAGAGGCTCCTAAAGCCAAGGAATGCTAGGCTAGTCATACTGCTAACCTGGTTTCTCGCTTTCCTTTTGAGCACAGTGCCATTGCTAGGCTTTCAGAAGCGATCCAGTCAGATTAACTACTGCTTCTTTTCCTGTGTGGTGGACATAGCCTTGATGGTGTACTTCAACTTCTTTGGTTGTGCTCTGATTCCCCTGCTGGCgatgtttttcatttatgttcacATCTTCCTAACCGTGAGGAGGCAGGTGAGGCGCATTGCAGCATTACGCTGTGCATTAGAAACACAAGCTAGGCAAAATTCAGCCATGCGACGCGAAGCAAAGAAGGCCACCTCGATTCTCCTGCTTATCTTCCTTTTTGTGCTGTGCTGGATGCCAATGCATATCATGAATTGCTTACAGCAGTTCTGTCCACAATGCTCAGTGCCAGTGCCTCTTATTTTGACAGCAATCATCCTTTCCCATGCCAATTCGGCCATTAATCCTGTGCTCTACGCCTACAAGATGAAATCCTTCCGTCAGGCGTTCAAAGACATGTTTCTTTGTTGTCGAGTTACTCCTCCACTGTCTGATACTACTGACAGCAATGGGACTTCAAAAAAACCACAAGTGTGAAATAATGTAGGCACCTGCAACAGTAGTCTCACTAAGAAAGTACTTATAAGGAGAACTATTGAGGGATAAATGTGAAAAGTACTTGGTACACAAATGCTTACATAATCTTACTTGGCAAGTATATGTTGTGTGTCTTAGTGTCAGCAATACTGTTATTCAAAagtctgtaaatataaatattaaagatgtaactgaaaataaatacattattaagattgaacagataatgcatcCTAAGTGAATAGAAATACaggtacattttttttagaagacTAGATCCTGTGGGAAGCaccaaaaaaaagtcatacaagtggagtgggaggtttttatGAAACTCGCAGTACAAAGAAAGATCCTGATCATTAGCATGTGAATGTGTAGTATTTCATACTCACTGCCTGTCAGGGTCTAAATTATGGCACTAgtctatatttatgtttatatgcttatattttttggaaatataaccaacaaaaaccaacaaaattcattagaaaatgtgGAACTACAAtgcctagcccaaacctgttccagcatgacaatgcctctgtgcacaaagtgataTGGTTTACtgaggttggtgtggaagaacagTTGGTGTGGCCTACACAGATCCCTGATCTCAACTCCACTGaagacctttgggatgaattggaaagACAGTGAATTGGAATGCATCtagacatcagtgcccaacctcttgTTAGGCTCTTATGGCTGAgtggacacaaatccccacagccacagtccaaaatctagtggaaagccttctcagaataatggaggctgttataacagcaaagtgtaaACAACGCAATATTAACATCCATAGTTTTGGGATGGGATGTTCACTActgaggtgtccacatacatttttggccatgtagtgtacaaACAagcttagtgtttttttttttaagaaagattCTCGGAGGTTTTTGTACTTTCATGCTAAGTGGACTTCGATCCAGAATAGGATACATACTATTCTGTacaaaatacactaaaaatcacaaaagacATATGCGTTTTTTAATAGAGGTGCTTCTCCATATTGTCTACACAGACCACGGTCTGTGCACAGGGCAGCATGTCTTTGCTGGGGTCTccaaaaaacaatttaattattaaaaaaataaaagttaactTGTACATTCATTGTGTATGTTATTCGTAAGCTTACACAGTCACATTAGAGCTCCATGTTGCATCTGATTGAGCCCAATTATGAACTCAATGATGATGTAGCTAAAGTTGTtgaggagttgaataaagttatgtgctacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308286.1 True 2564 mRNA 0.41 2 24286842 24291965

Neighbor

gene id symbol gene type direction distance location
prox1a prox1,prox1a,LOC108433936,LOC107594785,LOC107674077 coding downstream 208103 24040745 ~ 24078739 (-)
smyd2a smyd2a,LOC108269891,LOC108433938,LOC107592771,LOC107752785,LOC107697773,LOC107733184,LOC107594786,LOC107674111 coding downstream 258360 24003465 ~ 24028482 (-)
LOC113533700 begain coding downstream 335806 23919138 ~ 23951036 (-)
wars1 wars coding downstream 394203 23884755 ~ 23892639 (-)
LOC113534026 slc25a29,LOC107687216,LOC107557018 coding downstream 409885 23869091 ~ 23876957 (-)
LOC113534192 ect2l coding upstream 15034 24306999 ~ 24320497 (-)
ccdc28a ccdc28a coding upstream 34978 24326943 ~ 24331095 (-)
tmem121aa tmem121a,tmem121,LOC108270236,LOC107674105,LOC107592808,LOC107697696,LOC107594772 coding upstream 72037 24364002 ~ 24380106 (-)
tedc1 c9h14orf80 coding upstream 99088 24391053 ~ 24401559 (-)
dnal1 dnal1 coding upstream 111858 24403823 ~ 24408782 (-)
G171056 NA non-coding downstream 2441 24284009 ~ 24284401 (-)
G171028 NA non-coding downstream 38827 24247685 ~ 24248015 (-)
G170936 NA non-coding downstream 251944 24034508 ~ 24034898 (-)
G170887 NA non-coding downstream 288131 23995566 ~ 23998711 (-)
G170866 NA non-coding downstream 367819 23918425 ~ 23919023 (-)
G171160 NA non-coding upstream 126966 24418931 ~ 24494790 (-)
G171175 kdm1a non-coding upstream 176258 24468223 ~ 24469486 (-)
G171184 NA non-coding upstream 236362 24528327 ~ 24528696 (-)
G171232 NA non-coding upstream 306310 24598275 ~ 24655253 (-)
G171258 NA non-coding upstream 474945 24766910 ~ 24801063 (-)
greb1 greb1 other downstream 1107331 23148743 ~ 23179511 (-)
G170435 NA other downstream 1423075 22855494 ~ 22863767 (-)
G170023 NA other downstream 2170966 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 3167217 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 3469403 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 198273 24490238 ~ 24544079 (-)
G171256 NA other upstream 489317 24781282 ~ 24926224 (-)
G171569 NA other upstream 966874 25258839 ~ 25259362 (-)
G171734 NA other upstream 1286974 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3273293 27565258 ~ 27652301 (-)

Expression


Co-expression Network