ndnfl (LOC108270182)


Basic Information

Item Value
gene id ndnfl
gene name LOC108270182
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29118373 ~ 29130728 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308295.1
ctctctcactctccctctcacacacacactgatcagatcacagacacacatgtgTGTTCATGTCGAGCTCTGATCTGGACTGGGAGAaaagacagaagacagaaagatACAGGATGACagacaggaaaagagaaagacagatgtgCCTCTTTATCAGTGAGAGTTAGACAGTTCATATATGAAGCTGACGGAGAGACGCAGTGCACACGTTTATTCACTTTTCTCGTGATCCTGGTTTTCCTCTAAAAAGAATTAAAGTACTGTCtgagGTGACTGGctgatgtaataataatgagtgTGTTGTGGAGTTTGTATCTGGCTGTGAtgctcatctcacacacactgtgcactcTCTCACCTGAAAACGAGGTACCAATGCACACAACTACCTGGCTGAGTGATGGCAAGAACACACCTGTCCACCTGAAGAAAGgggacacacacagGCTCCATTTTACACTGGGGAAGAAGACGACAACTCTGAAGCTCACAGTTTCTCCCTGTTCAGGAAGCATAGAGTGGAGtctgagtgcacacacactgaaggaCAAACCAGCCAAGGATCattactGGAGCTTTAAGAAGAGCAAGCCTGAAGTGTGGTGGAGAAAATCAGCAAGTGAGAAGACACTTCACACCTACTCCGGCAGCGCTGTGGACACCTATGAGGGTCCTGCGCTGCAACCAGTCTCCGTCTATACACTGCGGATTAAATCAACGCAGgaagacacacatgcacatgtttaTCTCCATGAAGGACCCACACCATGGGGAGTGCTTCCAGAGTTGCCCTTTGACCCCAGAGTGCACATGCTCGGGGTTGGGATGAGCAGTGTGACACTGACCTGGAGTCCAAGTCCTTCTGTCATcaaagcacaacacacacacatacatacacggTTATATGAgtactgtgttactgtaaaCCGCAAACACAACTACAGGAGCCTGTGTGCAGCACAAGAGGAGAAAGGAGAGCTGAAAGATGAGAGGAAGGAAAGAGCGGTGGTCAAACTGGACGGATTCGATGagcatgtatgtgtatgtgaagaGGTGGAAAGTGTGTGTACCATCTCTGAGCTCCTCCCAAACACGCTCTATTACTTCGATGTGTTTGTGATTGACAGAATGAATGGCACCAGCGCAGCATACACAGGAacgtttgcacacacacatgcagaatcacacacacacacagaaccacacacacacagcaggatcCCGCTGAGAGAGGGGCAGGTGCAGTGGGTCACACTGAGTTCTGGTGCAGATGAGAGGAGGAGTTTCCGTTTCCGGCCTCGTGGTGGGCAGAAGAACGGCCTGCTCACACTGCTGAGctgcaacaacacacacacactcacacacacactctctgtttcAGTATTGGCCCAAGGAAATGAGCTGACATCACAGGAAATAGGAGATCAGCTGGTCCAGATGTGGCTGCAGGGGTTCTCCTCCTACCTGATCCAGCTCCGAATCTCTGCTCgaaacacacacgcagcagagagagagactttgtgtgtgaaaatgcagGCATCGTCTGCATTCCACCGCCGGGGGGCGCCGGCgctgccacacacactccacatcaagagctttaacacactgcGCACCTGCAGCTCCGTTACACTTGCGTGGATGGGAACTGAGGAACGAGGACTGTACTGCCTCTACAGACGCAGAGTGGACGAGCAGGTTGAGACAGGTGGAGACAGAGTAATACGGGGTGGACAGAGGTGTGAGACAAGTGGAGACAAAGTGGTACGGGGAAGAAAGAGGAGTGAGACAGGCGGAGACAAAGTGGTACAGGGTAGACAGAGGAGTGAGACAGGCGGAGACAAAGTGGTACAGGGTAGACAgaggagtgagacaggtggAAATGGAGTGATATGGGGTGGACCAAGGAGTGAGACAGGTCAAGACATAGTGATATGTAGTAAACAGAAGAGCGAGACAAGTCGAAACCGAGTGATACCTCGTGAACGTAGGAGTGATACGGACCGTTGCTTAGCGCCTGAATCCCGTCCTCCTGATCAACGTGTGCTCTGTAAATACTTCCAGGAACTTGATGCACGCCGTGCAGTTACTACGGCAACAGTAGGTGGGTTGGAGGCGGAGACACTGTACACTTTTGATATTTATCTGATGAGACGATGGGCACTTCCTGTTAAATACCACAGCAAGACAGTGCGGACCAGGAGAGACTGCTgagaactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagactgaataCACACCAGCAAAAGCTCACTGACTGGTCACCAGTCACATGGCCattgttgctgttataatgatgATGAGTTTATTCGAGTTCACACAGGACTGCAATATCACACCTGTCTATcactacagagagagacagggaagactcagagtgagacagaaagtcATAAAGAGAGActcagagtgagacagaaagtcATAAAGAGAGActcagagtgagacagaaa

Function

NR:

description
PREDICTED: protein NDNF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308295.1 True 2515 mRNA 0.50 4 29118373 29130728

Neighbor

gene id symbol gene type direction distance location
calm1a LOC108270185 coding downstream 26150 29089172 ~ 29092223 (-)
mrpl57 mrpl57 coding downstream 42906 29072704 ~ 29075467 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding downstream 122216 28987359 ~ 28996157 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding downstream 189478 28916376 ~ 28928895 (-)
il17a/f2 LOC108269798 coding downstream 233264 28882252 ~ 28885109 (-)
LOC113525666 LOC108261332 coding upstream 7292 29138020 ~ 29146605 (-)
G173349 NA non-coding downstream 10076 29107876 ~ 29108297 (-)
G173288 NA non-coding downstream 37763 29078414 ~ 29080610 (-)
G173339 NA non-coding downstream 41076 29076263 ~ 29077297 (-)
G173338 NA non-coding downstream 46948 29070035 ~ 29071425 (-)
G173262 NA non-coding downstream 103444 29014349 ~ 29014929 (-)
G173431 kif26b,kif26ba,LOC108415509 non-coding upstream 100885 29231613 ~ 29231919 (-)
G173433 NA non-coding upstream 103206 29233934 ~ 29234260 (-)
G173435 LOC107729288 non-coding upstream 109191 29239919 ~ 29241615 (-)
G173437 NA non-coding upstream 111372 29242100 ~ 29243390 (-)
G173438 NA non-coding upstream 113272 29244000 ~ 29244985 (-)
G173287 NA other downstream 68347 28836892 ~ 29050026 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other downstream 209821 28900904 ~ 28908552 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 258362 28798149 ~ 28860011 (-)
G172919 NA other downstream 1205829 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 1207483 27899482 ~ 27910890 (-)
G173434 kif26b,LOC107589674 other upstream 105191 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 115241 29245969 ~ 29329076 (-)

Expression


Co-expression Network