il17a/f2 (LOC108269798)


Basic Information

Item Value
gene id il17a/f2
gene name LOC108269798
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28882252 ~ 28885109 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308308.1
TCCTTACCTATTAAATGATCTGATAACGCAATCCAGGTCAGACATAGGGCACATTATCAGATAAATCAACTGTACGTGCTCATTGCCCTCAACTATATATAGAGGCAGCACAAATGTGAGAAGCACGGAGATGTTAGAAAGTCAACTGAGAAGCAGTAATGATGAGCTTAAAACAAACGGAACTGTCTCAATCCAAGCGTTCGTTCCTACAGGCTGTGTTCTGCTGTGGATTTCTGATGCTGAGTCTCACACACGCCACCTCCGAACAGACGACTGTCTGCGACATCGGCCTGTTAATCCCAAAACACTTCCACACTTCGGAGTCAGAGACGATGGAAGGAAACGGCAACATCAACAACCGCTCGCTGTCTGCCTGGAACTGGACTCCTCACACCAGCGCCCACAGGATCCCCGGAGTGATATTTGAGGCGACGTGTCAGTCTCATCACTGCTCGTATCCCAGCAGCCACCATCACACGGAGCTGAACTCGGTGCCGATATACAGCACCACGCTGGTGCTCACGCAGAACccaaaaaacaggaagtgcttCACCGTAAAGTTCCAGAGAGTCGTCGTGGGCTGCACGTGTGTGTGGGCCAAATCACTGCCGTGACGCCTCGGAGTCCACGGCAACCGAATGGTTTTAACACGTACACAAACCaatcaaataaaatgacattcagtttttaaatattagacaTTATTCCAAAGATATGTGAGATATTAATTGTGAAACTGATTAGATGAGCTTTGAGCTGATTATTATTTCACACTGAATGCTAGGAAAAGGCTTAAATTGGCTTGTTACAgatatttatatgtacagtatatgtatatctacagtatattgttGCGTATATTCAGAATGTATATTCACTAATATACACTAATCATTGACACACTCTACAGAAGACTATGTTAACATTGATGTAAGTTATTAGATGATGGCAGTAAGAGTTGTAGATGTTCTTTTGCTAATTGGCACTAACTGTGAAACTATTTGTGGTCTATAAACAACAACCAGCATTAGCTTACTTAGTGGAGATTGGAGATTATTccacatttataatttatgacttttcagtaaatgtttctgtgtattttcaGGTTTGtgttcttgacttctgttgttcCACCGAGTCAGAGTCACCTGATGTTGTTGAGAAAAATTTGTCCACTCGTGTTGCTCCTACGCTAATGCTGCATTTCACGATAGCCATGAAGACTAAAACagcatatatttatacattctttaattagtattcatatattcataatattaattCATAAACCACAAGAGAAGATTGTAAGTATCTCATCACCCCTTTAGTAAAGTGACTCCTCGTTTAGGAAACACTGACACAATTACACAATGTTTAAGATCCtagcatagagagagagagagagagagaca

Function

NR:

description
PREDICTED: interleukin-17A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308308.1 True 1415 mRNA 0.41 3 28882252 28885109

Neighbor

gene id symbol gene type direction distance location
lrrc57 lrrc57,LOC107682003 coding downstream 4371 28867671 ~ 28877881 (-)
nfkbiab nfkbia coding downstream 110090 28768475 ~ 28772162 (-)
ppp2r3c ppp2r3c,LOC107682116,LOC107725453,LOC106611177 coding downstream 140181 28736318 ~ 28742071 (-)
LOC113534010 fbxo33 coding downstream 152765 28722659 ~ 28729487 (-)
gemin2 gemin2,LOC107589646,LOC107725416 coding downstream 190850 28687175 ~ 28691402 (-)
gpn1 gpn1,LOC107729295,LOC107725955,LOC107682285,LOC107693155 coding upstream 31267 28916376 ~ 28928895 (-)
khk khk,LOC107729261,LOC107693158,LOC107725530 coding upstream 102250 28987359 ~ 28996157 (-)
mrpl57 mrpl57 coding upstream 187595 29072704 ~ 29075467 (-)
calm1a LOC108270185 coding upstream 204063 29089172 ~ 29092223 (-)
ndnfl LOC108270182 coding upstream 233264 29118373 ~ 29130728 (-)
G173293 NA non-coding downstream 7934 28873443 ~ 28874318 (-)
G173292 NA non-coding downstream 10297 28871470 ~ 28871955 (-)
G173268 NA non-coding downstream 15577 28865913 ~ 28866675 (-)
G173289 NA non-coding downstream 18085 28862908 ~ 28864167 (-)
G173282 NA non-coding downstream 19644 28861401 ~ 28862608 (-)
G173260 NA non-coding upstream 48851 28933960 ~ 28985241 (-)
G173262 NA non-coding upstream 129240 29014349 ~ 29014929 (-)
G173338 NA non-coding upstream 184926 29070035 ~ 29071425 (-)
G173339 NA non-coding upstream 191154 29076263 ~ 29077297 (-)
G173288 NA non-coding upstream 193305 29078414 ~ 29080610 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other downstream 22241 28798149 ~ 28860011 (-)
G172919 NA other downstream 969708 27912237 ~ 27912544 (-)
si:ch73-204p21.2 NA other downstream 971362 27899482 ~ 27910890 (-)
efcab11 efcab11 other downstream 1156495 27671623 ~ 27725757 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other downstream 1229951 27565258 ~ 27652301 (-)
stmn4l stmn4,stmn4l,LOC108413759,LOC107682023,LOC107586609,LOC107693156,LOC107729296,LOC107589635 other upstream 15795 28900904 ~ 28908552 (-)
G173434 kif26b,LOC107589674 other upstream 350810 29235919 ~ 29239270 (-)
smyd3 smyd3 other upstream 360860 29245969 ~ 29329076 (-)

Expression


Co-expression Network