kctd3 (kctd3,LOC107590917,LOC107719476,LOC107697722,LOC107733121)


Basic Information

Item Value
gene id kctd3
gene name kctd3,LOC107590917,LOC107719476,LOC107697722,LOC107733121
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23721794 ~ 23735252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308327.1
TGgactctctgattggctgttctgCTCGACGTCGACGTCGGCTTTGGCTTGTTCTAGCGCTCTGTTTGCGGCGAACGTAAAACAAACgcgaaagaaaaaacagaaagagcgacttttttgtgtttggtgtggtttttttctttcttcatttgttCTGTTATATCGATAAGGCAGTGATATTCTTGAGGAACATGGCGGACACGGTGTGTTAAGACTCCACACACGGCCCTGGGCTGAGGCGTGATGTTTTCAGAGAGTTGCTGGGAAGAGCACGCGCAGCAGGAGTGGAACGGGATCAAGAGCgcgagctgctgctgctgctgctgctgctgaacgCTGCTCGGTGGCACGATGGCTGGAATGTGTAACGGCGCCACATCTGGGCCGGGTGACATCATCCAGCTGAACGTCGGCGGAACACGatttAGCACCTCAAGACAGACTCTTATGTGGATTCCAGACTCTTTCTTCTCAAGTTTACTCAGTGGGAGAATATCAACACTAAGGGATGAAACTGGAGCTATATTTATTGACAGGGACCCAACCGCATTTGTGCCCATTTTAAACTTCCTTCGTACTAAAGAGTTAGACTTAAGAGGGGTCAGCATAAGCATTCTGCGCCATGAAGCTGAGTTTTATGGGATTACACCTTTAGTTCGACGTTTGCTGCTGTGTGAGGAGCTAGAGAGATCATCATGCGGAAGTGTGCTTTTTCATGGCTACCTCCCACCACCAGctatCCCAGCTCGCAAAGCTGCCAGTGGGCAGAGTGCAACTGCTGGAGTCCAGGAGGAGTACCCATGCCCCAGTGGAGCGGAGGGGGGCTTCTCTCGCTCATGCTCACACACCGCTTTGCCTGGGCCTAACGGATAAATTTCAGCTGGATCGGCAGTTGATCCCAGGAAGGTGCTCATCGTTGCTGGTCATCATAACTGGATAGTAGCTGCCTATGCTCATTTCGTCATTTGCTACAGGATAAAGGAATCTTCAGGATGGCAGCAGGTCTTCTCAAGTCCTTACCTAGACTGGGCCATTGAGCGTGTCGCGCTAAATGCGAAAGTAGTAGGTGGTCCCCATGGTGACAAAGACAAGATGGTTGCGGTGTCATCGGAGAGCAGGATCATCTTGTGGAGTATCCAGGATGGAGGAAGTGGCAATGAGATAGGTGTGTTCAGTCTTGGCGTGCCTGTTGATTCTCTTTTCTTCATTGGGAGTCAGCTGGTTGCCACCAGTCACACTGGGAAGGTTGGTGTTTGGAACGCAGTGACGCAGCACTGGCAAGTGCAGGATGTTGTGCCCATCACCAGCTGTGACACTGCCGgatcctttcttcttcttggaTGCAATAATGGCTCCATTTACTACATTGACATGCAGAAGTTCCCACTGAGAATGAAGGACAATGACCTCCTGGTGACTGAGCTCTACCATGACCCCTCAAATGATGCCATCACAGCCCTCAGTGTCTACTTAACACCCAAAACCAGTGTGAGCGGAAACTGGATTGAGATTGCGTATGGCACTAGTTCAGGTGCGGTGCGTGTGATAGTGCAGCATCCAGAGACGGTTGGATCCGGGCCTCAACTGTTTCAGACGTTCACAGTGCACCGCAGCCCTGTCACTAAGATCATGCTGTCTGAGAAACACCTTGTGTCAGtgtgtgcagACAATAACCACGTAAGGACGTGGACAGTGACCCGCTTTAGAGGAATGATCTCCACTCAGCCAGGATCCACGCCACTGGCTTCCTTCAAGATCATCTCGCTGGAGGAGACGGAGAGCCACAGCAGCTACTCCTCTGGCAATGATATAGGTCCatttggagagagagatgaccaGCAAGTATTCATTCAGAAAGTCATTCCTATAACCAACAAACTCTTTGTGCGTCTCTCGTCCACTGGAAAGAGGATCTGTGAGGTGCAGGCAGTGGACGGCACCACCATCACGTGTTTCACAGTGCGCGAGTGTGAGGGCTCCAGTCGTATGGGCTCCCGGCCACGTCGTTACCTCTTCACTGGCCATGCGAACGGCAGCATCCAGATGTGGGATCTAACCACGGCCATGGACACAGCGAACAAGAGCGATAGCAAAAGCAAACGTGATGCTGTGGGGGGGCCCACAGAGGAGGAGCTTCTAAAGTTGCTTGATCAATGTGATCTGAGTACATCACGCTGTGCGACACCCAACATTAGTCCCGCCCCTTCAGTACTGCACCACAGCCGACTCCGAGAGTCCTGCTCCAGTCTCCAGCTGCAGGCCCAAGAACTCTTGGCAGAGACTGCCACCTATGGCGCTGTACGTCCATATCGAGAGAGCCCACTGCTGGCACGTGCCCGTCGCACAGAGAGCTTCAGCAGCTATCCAGACTTCCACACCCTCAACCTGGCCAAAGTCCTGAGGGAACACGGCGGGCATTGCAGCGGCACTGACGACGACAGCAatggtgacactggagacaagAGGAGCTCAGAGAGTCCAGTGAGCACTGCAGACAGCCCCCGAGACCCTCGCTGCAGGGCACACTCCTCTGATGAAGGTACCTCTGAGTGCAGAACGGAGGGTAGGAGGAGAGGAGCGCTCGATGGGAACTTCCTGGGCCGGAAGAAGGCACCTCCGGTCCCGCAGctgagctctgtgtctgtggggaGTGAGGCAGGAGGCAGTGACTCATCCAGCACAGCCTCGCCCTCTCCAACTAAAGCGTCCACTTCCCCACGGCACCGCAGGGGACTAGACATGAGTGAGTGACGCTCTGAAAGCTAAAACAGCATATATTTCCTGAAGCAGTATTACCATATCCATAAGCATAAACATATCCCTGAAGGAGTGTCTGGTGAGAAAACTATAGATAGGGGTGTATAAAGCAGCAAGTTactaaatgaatatttaatatatactaCAAATATCTTACCCAGTTCTGAAGCACTTTAGTTTCAGTTAATATTCTAATCCCTGTAAAGGTTAAATGCTACAGGTCAGAACAGAAACGACTGGAGGCAAAAGTAACGTGTCACTACAGTGAACTAACTTCTTTTCTGTAAAGCAGTCgcactttattttgctcgtTTCACATTTCAAGAAGGGAATAATCTCAGACTTTCGCAGATGcctttttcatttgaaatgttaTATTGTgagcttattattttttttgatttttggtcatttttgggTGGATAGTTCACAAAGAGGGATCATGTTCAGTGAAACAGGTTCATTTAGTACCAAACCCtgttttacaatgttttacttttaTAGACGTGTAGGCACATTATTAGATCATGCAAGCACAAAGCAagtcagttcagttcagtttaagTCAGAAAACTAGGCTGGTGCAGAAATACTGCTGGTAAGCTGCCAGGTTAGGGATATAGAGCTCTAAGGGGTTGggtatattattatatgcttAATATTATATGCTTAGTATTAATTCTGCTACAACATATTTACTCATGaggtttattttttactctGGTTTGTGGATAAAAACATTTCCTCAGCCAGTTTTACAGACGGTCTAAAGACGTGCTTCGTCTCTTTTATGCAATTGGTACTCATTAAATCGGAATCTGTTAAAGTATATATGTATGAATAACATTATATGCCTAtcttgttaaaaagaaaaagaa

Function

symbol description
kctd3 Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD3 (potassium channel tetramerization domain containing 3).

NR:

description
BTB/POZ domain-containing protein KCTD3

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21915 KCTD3; BTB/POZ domain-containing protein KCTD3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308327.1 True 3635 mRNA 0.49 18 23721794 23735252

Neighbor

gene id symbol gene type direction distance location
spata17 spata17 coding downstream 456729 23234593 ~ 23265065 (-)
lpin1 lpin1 coding downstream 574056 23113368 ~ 23147738 (-)
LOC113533941 fut8a,LOC108270174,LOC108433921,LOC107752771,LOC107592788,LOC107674109 coding downstream 887802 22767942 ~ 22833992 (-)
LOC113534106 NA coding downstream 984299 22582782 ~ 22737495 (-)
dync1h1 dync1h1 coding downstream 1373641 22285848 ~ 22348153 (-)
ptpreb ptpreb,LOC108270210,LOC107590916,LOC108444109,LOC107582256 coding upstream 4767 23740019 ~ 23760260 (-)
LOC113534104 klhl28,LOC106581578 coding upstream 44763 23780015 ~ 23792144 (-)
soul3 LOC108269867 coding upstream 91796 23827048 ~ 23836772 (-)
LOC113534026 slc25a29,LOC107687216,LOC107557018 coding upstream 133839 23869091 ~ 23876957 (-)
wars1 wars coding upstream 149503 23884755 ~ 23892639 (-)
G170795 NA non-coding downstream 3025 23718545 ~ 23718769 (-)
G170782 ush2a,LOC108444108 non-coding downstream 17283 23704296 ~ 23704511 (-)
LOC117598237 NA non-coding downstream 492638 23201694 ~ 23229156 (-)
G170558 NA non-coding downstream 615849 23105235 ~ 23105945 (-)
G170477 NA non-coding downstream 729892 22986696 ~ 22991902 (-)
G170805 NA non-coding upstream 41303 23776555 ~ 23777311 (-)
G170788 NA non-coding upstream 42727 23777979 ~ 23779234 (-)
G170852 NA non-coding upstream 158872 23894124 ~ 23894355 (-)
G170866 NA non-coding upstream 183173 23918425 ~ 23919023 (-)
G170887 NA non-coding upstream 260314 23995566 ~ 23998711 (-)
greb1 greb1 other downstream 542283 23148743 ~ 23179511 (-)
G170435 NA other downstream 858027 22855494 ~ 22863767 (-)
G170023 NA other downstream 1605918 22115565 ~ 22115876 (-)
bmf1 bmf other downstream 2602169 21088303 ~ 21119625 (-)
grem1b LOC108269477 other downstream 2904355 20813689 ~ 20817439 (-)
luzp1 luzp1 other upstream 754986 24490238 ~ 24544079 (-)
G171256 NA other upstream 1046030 24781282 ~ 24926224 (-)
G171569 NA other upstream 1523587 25258839 ~ 25259362 (-)
G171734 NA other upstream 1843687 25578939 ~ 25582527 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 3830006 27565258 ~ 27652301 (-)

Expression


Co-expression Network