manea (LOC108270006)


Basic Information

Item Value
gene id manea
gene name LOC108270006
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25664338 ~ 25669975 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034308356.1
TCGAAACTCGAATAGCTCCGTCCTCCCTACGTGCAAGTGCACTCACTGGTTTCTGAAACGATGGCTTTTGTagactatatagtgcactatatgttgAATTTGGAGCCGTTTGGGTTTCAGTCTGACACTTCCGGGTAAACAGTGCAGCtggtactgttactgttactattaaGTACAACACAAGAGAATCACTTCCCGCAATGTAACTAAAGGAAGAAACAACATGATTGAGAAAAGGCGTCAAGACAAAGAGGTCAGAATTAGTGCAGACCTACTGACTGAGCTGCTGTCTGTGGAAAGGGCCAGCTTCTCCGGAGAATGACGCGATTTCGGCGCAAAATATGTGTGGCCTTGACTGCACTGGCCCTGTTCATCTTGGTCATTCTGAAAATCCTGTCTCTGGATGACAGGATCTCGGGGGGTGGCTTTGGACTTGAAGTCTTTCCTCAGGAAAGGCAGGGAGATGGTGCTGCTGAGATTCATGTCATACCAGAGACCAGCGTGATCAAAAAGATGTGGAAGGAAAAGGTTGCGAGCATCTTCGATAGAGGTGCTCACGAGGAAGATTTTCCTCCTCCAAATTACAACGTACATGTTTTCTACTACACGTGGTATGGAACCCCTCAATTTGATGGGAAGTACATTCACTGGAATCATCCACTTCTGCCACACTGGAACCCCAAAGTAGCGCCGGGCTACGCAACAGGAACACACAAGCCTCCAGATGACGTCGGTGCCAGTTTCTACCCCGCCTTGGGGGCGTACAGCTCTCGAGACCCTTCTATTATAGAGGTTCATATGCAGCAGCTACGGACAGCATCCATAGGTGTTCTCGCAGTGTCCTGGTACCCGCCTGGCATGAAGGACGATAACGGTGAACCGACTGAAGACATTGTGCCTTTGATTCTGGAAGTAGCCGCGAAAGTACAAAGTGAAGGTAGAAGTgtGGTTTTTCATATCGAGCCATACAGAGGGCGCAGTGACAACACTATGCttgaaaatatcaaatacaTTATTGAGAAGTATGGAGATCATCCTGCTTTTTTCAGATACAAATCAAGCACTGGAAAGCTTCTTCCATTGTTCTATATATACGACTCCTATTTGCAAAGTCCAGATATCTGGGCGCAGCTGCTTAAGAGCACTGGGAAGAGAAGCATCAGAAACACCCCATATGATGGCATCTTTATCGGTCTTCTGGTGGAGGAGAAGCATAAAGCCGAAGTCCTGGCTGCTGGCTTTGATGGAATTTACACATACTTTGCAACTAACAGCTTTTCCTATGGCTCCTCTCAACGGAACTGGAGATCCATAAAGGCTTTCTGCGATAGCAACAATTTGATTTTCATCCCCAGCGTAGGTCCAGGCTATATTGACACCAGCATTAGACCCTGGAACGGTCAGAACACACGGAACCGCATCAACGGCAAGTATTACGAGACGTCTCTGAAAGCGGCGCTGGAGACCAGGCCCGAGATCATCTCCGTGACTTCGTTTAACGAGTGGCACGAAGGAACTCAGATCGAACCAGCCATACCTAAAACAAGAGGCCAGACTGCTTACTTAGATTATCTTCCCTACAAACCGTCTTTGTATTTAGACATTACACGCAGGTGGGCGGAGAAATTCAGAGAAGAACAAGAGAAATGGCTACAGTGACTCATTCGAATGCGATTTGAATCTGGATGAATGAATtcttaatgaaatgaaatgtaactatttaCACTGAACTCAGCATCTTAGTCAAGTATTCAGTCACCTCGCTTGTGTTAAATCCTAGACGACGTCATCTATGACGAGCATCCATCAAATGTCCTTATTGAAATGACAGCGAGAAGAAGTAGTCTCCCATACTGTCAgttaaacacataaatacaaccttacaattatttttaaatctgaaaaaaatgcagaacatgAATTTTGTTGATTCTAGTTGAGAAAGTTGATTGTTCTTCCGTTTCATGGATTGTTCAACAGATTATTCATCACTTTTGATTGAAATCTATGTCATACTTGGTTTGCTTTGGCAAAACCTTttgtctgggaaaacccatcaaaTGTCGCGATGTCTGATATCTGAAATCAGAGAGTTTTTCTGTCAATAAAATAAGCAACATATCTACGAAAacctaaatata

Function

NR:

description
glycoprotein endo-alpha-1,2-mannosidase-like

GO: NA

KEGG:

id description
K15538 MANEA; glycoprotein endo-alpha-1,2-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034308356.1 True 2141 mRNA 0.44 5 25664338 25669975

Neighbor

gene id symbol gene type direction distance location
fut9a fut9,fut9a,LOC108443415,LOC107583473,LOC107751748,LOC107564944,LOC107755789 coding downstream 3683 25651808 ~ 25660655 (-)
fhl5 fhl5,LOC108270008,LOC107755788,LOC107583474,LOC107693122,LOC108443407,LOC107680759,LOC107751805 coding downstream 24117 25634727 ~ 25640221 (-)
si:ch211-266g18.9 LOC108270005 coding downstream 30455 25620016 ~ 25633883 (-)
col10a1a col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107564946,LOC107680775,LOC101475390,LOC105908263 coding downstream 71595 25587488 ~ 25592743 (-)
fyna fyna,LOC108270342,LOC108443411,LOC107751750,LOC107680776,LOC107583469,LOC107755790 coding downstream 90217 25557409 ~ 25574121 (-)
cx52.7 LOC108269563 coding upstream 9339 25679314 ~ 25680741 (-)
LOC113534079 LOC108269777 coding upstream 642834 26312809 ~ 26321625 (-)
si:dkey-288a3.2 LOC108270389 coding upstream 693091 26363066 ~ 26403989 (-)
bcl11ba bcl11b,bcl11ba,LOC108270293,LOC107588284,LOC107680755 coding upstream 1071399 26741374 ~ 26794919 (-)
setd3 setd3,LOC107588283,LOC107583493,LOC107668608 coding upstream 1148925 26818900 ~ 26845135 (-)
G171726 fabp7,LOC108443406,LOC108269522,LOC108247051,LOC107723744,LOC107693085,LOC107583466 non-coding downstream 154718 25504388 ~ 25509620 (-)
G171710 NA non-coding downstream 194264 25469504 ~ 25470074 (-)
G171594 NA non-coding downstream 274467 25389583 ~ 25389871 (-)
G171573 samd4a non-coding downstream 372400 25291426 ~ 25291938 (-)
G171570 NA non-coding downstream 374836 25287152 ~ 25289502 (-)
G171755 NA non-coding upstream 103529 25773504 ~ 25778966 (-)
G171864 NA non-coding upstream 307821 25977796 ~ 25978027 (-)
G171874 NA non-coding upstream 388270 26058245 ~ 26058509 (-)
G172016 NA non-coding upstream 925306 26595281 ~ 26595483 (-)
G172196 NA non-coding upstream 1102157 26772132 ~ 26773050 (-)
G171734 NA other downstream 81811 25578939 ~ 25582527 (-)
G171569 NA other downstream 404976 25258839 ~ 25259362 (-)
G171256 NA other downstream 738114 24781282 ~ 24926224 (-)
luzp1 luzp1 other downstream 1120259 24490238 ~ 24544079 (-)
greb1 greb1 other downstream 2484827 23148743 ~ 23179511 (-)
foxn3 foxn3,LOC107583483,LOC107755777,LOC107751738,LOC107693108,LOC107680774 other upstream 1895283 27565258 ~ 27652301 (-)
efcab11 efcab11 other upstream 2001648 27671623 ~ 27725757 (-)
si:ch73-204p21.2 NA other upstream 2229507 27899482 ~ 27910890 (-)
G172919 NA other upstream 2242262 27912237 ~ 27912544 (-)
ralgapa1 ralgapa1,LOC107589631,LOC107725466,LOC107682070,LOC107586611,LOC107693153 other upstream 3128174 28798149 ~ 28860011 (-)

Expression


Co-expression Network