LOC113530231


Basic Information

Item Value
gene id LOC113530231
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20732930 ~ 20733052 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403127.1
GAGCTGTATGAAAGGAGCGAAAGTTAGTCCTCCCTTTGACAAGGATGGAAAAAGGTCCTACAACTGGTATGCCACACACATACGATATATAAAATGGGTATATAATGAACTAGATAGGTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403127.1 True 123 ncRNA 0.38 1 20732930 20733052

Neighbor

gene id symbol gene type direction distance location
LOC113530100 LOC108270491,LOC108430665,LOC106610839,LOC107678700,LOC106587081,LOC102312465,LOC105908186 coding downstream 4103 20569883 ~ 20728827 (-)
chrm5a LOC108269673,LOC108430663 coding downstream 186636 20544766 ~ 20546294 (-)
acp7 acp7,papl coding downstream 211504 20501149 ~ 20521426 (-)
LOC113530102 thbs1,LOC108270370,LOC107719693,LOC107568499,LOC107687209,LOC107743901,LOC107678760 coding downstream 279130 20444195 ~ 20453800 (-)
LOC113530110 cyp1c1,cyp1c3,LOC103357016,LOC107745367 coding downstream 360827 20369134 ~ 20372103 (-)
arhgap11a LOC108270194 coding upstream 88749 20821801 ~ 20835679 (-)
actc1b acta1,act2,LOC105024319,LOC108430668,LOC102689871 coding upstream 105005 20838057 ~ 20842152 (-)
LOC113530222 LOC108269994 coding upstream 163582 20896634 ~ 20956265 (-)
LOC113529663 NA coding upstream 293455 21026507 ~ 21040538 (-)
ankrd9 ankrd9 coding upstream 448713 21181765 ~ 21183223 (-)
G169126 NA non-coding downstream 159317 20573407 ~ 20573613 (-)
G169118 NA non-coding downstream 168102 20564155 ~ 20564828 (-)
G169109 NA non-coding downstream 185053 20547645 ~ 20547877 (-)
G169104 NA non-coding downstream 192647 20538862 ~ 20540283 (-)
G168908 NA non-coding downstream 289158 20442997 ~ 20443772 (-)
LOC113529548 NA non-coding upstream 497891 21230943 ~ 21241637 (-)
G169424 NA non-coding upstream 571154 21304206 ~ 21304537 (-)
G169435 NA non-coding upstream 585174 21318226 ~ 21318440 (-)
G169454 NA non-coding upstream 635388 21368440 ~ 21373041 (-)
LOC113529764 NA non-coding upstream 773383 21506435 ~ 21514989 (-)
G169119 NA other downstream 167131 20564929 ~ 20565799 (-)
gchfr gchfr,LOC106583112 other downstream 402184 20322764 ~ 20330746 (-)
LOC113529462 LOC108269960 other downstream 431376 20298511 ~ 20301554 (-)
srp14 srp14,LOC106610862 other downstream 714213 20013579 ~ 20018717 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 1123152 19600130 ~ 19609778 (-)
grem1b LOC108269477 other upstream 80637 20813689 ~ 20817439 (-)
bmf1 bmf other upstream 355251 21088303 ~ 21119625 (-)
G170023 NA other upstream 1382513 22115565 ~ 22115876 (-)
G170435 NA other upstream 2122442 22855494 ~ 22863767 (-)
greb1 greb1 other upstream 2415691 23148743 ~ 23179511 (-)

Expression


Co-expression Network