LOC113538592


Basic Information

Item Value
gene id LOC113538592
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19441089 ~ 19449728 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403864.2
CCAAATTCGTCCATTAGATTCTGAGCGCGCGCGCGGCCGGGTTAAATCGGCTAAAGCTGATTGCCATGGTGACGTCGCATCCTCTCTCCAGCATCTGGAACATCATGAAGAGACCCAGTCCAATCCTGTACATGTACAGTCCTGTGTAGGGAGCAGCTAAGATCTGATTAAGGAAATCAAAGAAGGACAACAAGTGAGTGCATGTAATGAAATTAGAAGCACCTCCTGTCTGCTGATCAAATTCCAGACCTGCACTCCAGAGCACAATTATCAGTTTAAACGATCGGATAAATTCAGTTTGTTTTCAAAGATTAACAAAAGATGTATCCTGGTCACGACAGGAGATGGATCAGAAACATTAATGTGGGCTGTtgaaacatttcattcattcgttcgttTGTGCGTTCGTTCGTTCGTTCGTTCATTcgttctttcattcatttgtttgttcttttgtttgtttgactttgtgcattttaaacCTTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403864.2 True 488 lncRNA 0.42 3 19441089 19449728

Neighbor

gene id symbol gene type direction distance location
grhl1 grhl1,LOC108269933 coding downstream 19164 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 48907 19388971 ~ 19392182 (-)
fank1 fank1,LOC108436747 coding downstream 76850 19353863 ~ 19364239 (-)
abraxas2 fam175b coding downstream 428135 19001132 ~ 19012954 (-)
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 507294 18931562 ~ 18933795 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 49020 19498748 ~ 19524868 (-)
LOC113538672 LOC108269607 coding upstream 78939 19528667 ~ 19583250 (-)
LOC113538986 LOC108269623,LOC108430634 coding upstream 179506 19629234 ~ 19643615 (-)
LOC113538599 inafm2 coding upstream 323072 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 390643 19840371 ~ 19867165 (-)
G168304 NA non-coding downstream 14410 19319838 ~ 19426679 (-)
LOC113538783 NA non-coding downstream 155248 19280278 ~ 19285841 (-)
G167883 NA non-coding downstream 638396 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 844203 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 869196 18571503 ~ 18571893 (-)
G168354 NA non-coding upstream 44335 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 136614 19586342 ~ 19586548 (-)
G168405 NA non-coding upstream 148640 19598368 ~ 19598898 (-)
LOC117598328 NA non-coding upstream 229769 19679497 ~ 19680669 (-)
LOC117598314 NA non-coding upstream 233511 19683239 ~ 19684146 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 474476 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 593393 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 798200 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 1058634 18375403 ~ 18382455 (-)
G167566 apob other downstream 1124882 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 137196 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 139640 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 150402 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 563851 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 848783 20298511 ~ 20301554 (-)

Expression


Co-expression Network