LOC113538783


Basic Information

Item Value
gene id LOC113538783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19280278 ~ 19285841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403878.2
GatcaaggagctatcaaaacaaatcTGGGACAAACTTCAGGAAACATCTCAACCAGAGTTTGGTGATAAACAAAATCCCAATCCCCTCGGGCACAATAAtggatttattattaaaaaaaaaggaaaaaaaatatggcacaatcGTGACTCTACCTAGGTCATCCACCAAAAAGCTTGTGAACAGCAAAGCCACATTTTGATCTAGGCCTTGGACGACTACACCAGCTCATTTCCCTTGTTTACGTGAACTCCTCCTTCCATGATCATTCACAGGATGGGGCCGGTGAAGGAGGAGCAGCGTGTTGTTTTGGGGCCTCTTCAAAAGCACTTCCTGAAAGGCTCTGATGTGCTCTCAGAGCAGCTGCTGTGACACGGCTCCCAAATCTGAAATCCCAAACTGCTGTGACTCCTCTCAACACGAACGCAGAGTGAGGTGggaatgcaggaaaaaaaattacagaaaaacaaaacccaacTATGGTAGGATTTGCTTTAAGAAGAGGTGatgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403878.2 True 510 lncRNA 0.44 3 19280278 19285841

Neighbor

gene id symbol gene type direction distance location
abraxas2 fam175b coding downstream 267324 19001132 ~ 19012954 (-)
LOC113538543 dtd2,LOC107197769,LOC107561538,LOC107674124,LOC107733196,LOC107594854 coding downstream 346483 18931562 ~ 18933795 (-)
LOC113538579 LOC108270446 coding downstream 348921 18918532 ~ 18931357 (-)
pomt2 pomt2,LOC107594797 coding downstream 363051 18902222 ~ 18917227 (-)
lin52 lin52,LOC107594798 coding downstream 379406 18888165 ~ 18900872 (-)
fank1 fank1,LOC108436747 coding upstream 68022 19353863 ~ 19364239 (-)
klf11b LOC108270275 coding upstream 103130 19388971 ~ 19392182 (-)
grhl1 grhl1,LOC108269933 coding upstream 121876 19407717 ~ 19421925 (-)
LOC113538555 LOC108269630,LOC108441822 coding upstream 212907 19498748 ~ 19524868 (-)
LOC113538672 LOC108269607 coding upstream 242826 19528667 ~ 19583250 (-)
G167883 NA non-coding downstream 477585 18802441 ~ 18802693 (-)
G167802 NA non-coding downstream 683392 18596581 ~ 18596886 (-)
G167786 NA non-coding downstream 708385 18571503 ~ 18571893 (-)
G167783 NA non-coding downstream 715899 18563971 ~ 18564379 (-)
G167684 NA non-coding downstream 821484 18458455 ~ 18458794 (-)
G168304 NA non-coding upstream 33997 19319838 ~ 19426679 (-)
LOC113538592 NA non-coding upstream 155248 19441089 ~ 19449728 (-)
G168354 NA non-coding upstream 208222 19494063 ~ 19498688 (-)
G168399 NA non-coding upstream 300501 19586342 ~ 19586548 (-)
G168405 NA non-coding upstream 312527 19598368 ~ 19598898 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 313665 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 432582 18839615 ~ 18847696 (-)
bahd1 bahd1,LOC108436768 other downstream 637389 18600295 ~ 18642889 (-)
gdf7 LOC108270114 other downstream 897823 18375403 ~ 18382455 (-)
G167566 apob other downstream 964071 18305743 ~ 18316207 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other upstream 301083 19586924 ~ 19588902 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other upstream 303527 19589368 ~ 19595214 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other upstream 314289 19600130 ~ 19609778 (-)
srp14 srp14,LOC106610862 other upstream 727738 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 1012670 20298511 ~ 20301554 (-)

Expression


Co-expression Network