LOC113539017


Basic Information

Item Value
gene id LOC113539017
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18319970 ~ 18320076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403895.1
ttgCTACGGCAGCACATATACTAAAATTGGATTGATACAGAGACGATTAGTATGGCCCCTGTGAAAGgatgacatgcacacacagcttGATGTGGGTGCAAAGGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403895.1 True 107 ncRNA 0.45 1 18319970 18320076

Neighbor

gene id symbol gene type direction distance location
apoba apob,LOC107697732 coding upstream 3588 18293819 ~ 18316382 (+)
nhsl1a LOC108270058,LOC108425629 coding upstream 132608 18132424 ~ 18187362 (+)
LOC117598336 NA coding upstream 393950 17925706 ~ 17926020 (+)
mboat2a mboat2,mboat2a,LOC108269814,LOC107553282,LOC107752759 coding upstream 453314 17800201 ~ 17866656 (+)
adam17a adam17,LOC108270063 coding upstream 625225 17673961 ~ 17694745 (+)
tpp1 tpp1 coding downstream 68029 18388105 ~ 18396271 (+)
degs2 degs2,LOC107697737,LOC107733197 coding downstream 88014 18408090 ~ 18414404 (+)
disp2 disp2 coding downstream 215258 18535334 ~ 18551703 (+)
ccdc32 c9h15orf57 coding downstream 243327 18563403 ~ 18568676 (+)
itpka itpka coding downstream 350366 18670442 ~ 18681876 (+)
G167546 NA non-coding upstream 31663 18286202 ~ 18288307 (+)
G167428 NA non-coding upstream 192603 18126435 ~ 18127367 (+)
G167395 NA non-coding upstream 230156 18089604 ~ 18089814 (+)
LOC113538631 NA non-coding upstream 231973 18072175 ~ 18087997 (+)
G167271 NA non-coding upstream 331554 17924713 ~ 17988416 (+)
G167557 NA non-coding downstream 55906 18375982 ~ 18376347 (+)
G167556 gdf7,LOC108270114,LOC108425593,LOC107594862,LOC107674098,LOC107733118,LOC107563371,LOC107719468 non-coding downstream 57358 18377434 ~ 18378760 (+)
G167636 NA non-coding downstream 138363 18458439 ~ 18458992 (+)
G167621 NA non-coding downstream 139422 18459498 ~ 18470004 (+)
G167665 NA non-coding downstream 193663 18513739 ~ 18513997 (+)
kidins220a LOC108269813,LOC108425633 other upstream 397219 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 613138 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 889219 17385507 ~ 17430751 (+)
G166976 NA other upstream 1263159 17055674 ~ 17056811 (+)
asxl2 asxl2,LOC102788176,LOC107600867 other upstream 1352629 16953173 ~ 16967341 (+)
ldah ldah other downstream 10391 18330467 ~ 18374080 (+)
prlh2r LOC108269650,LOC108425589 other downstream 249303 18569379 ~ 18578308 (+)
G168191 NA other downstream 1354837 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 1402704 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 1559659 19879735 ~ 19886509 (+)

Expression


Co-expression Network