LOC117598286


Basic Information

Item Value
gene id LOC117598286
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 22416176 ~ 22416851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578969.1
CTAGAATTAGAGCTGAGCTAGATCCCACATGTGACAGATGTAAACAAGGTCCTGCAAACCTAATACATATGTTTTGAAGACTGCAGGACTCTCCTCCCGAATGCATATGTTCAAGAGCTGCTCTTAGCCTGAACCTGAGAACAGCTTTGGATGGGATGGCGAGATGTCATCAATTCTGCATCTTCTCCCCCAAACATCAAGAGGGCATTAAAAAACAGCGAAGATTGGTTTGGCTCAAGCTGGAAAGAATCTCGTGAGTGGCCACAGGAAGGAGCCAGTCTCACTACCTTCCTTGAGCAAGCTGAAGCAAGACACCCCTTCCTCCTGTGCACTAGTGAGCAAAAGAATAAAATCGGACGGTTCTGCATCGTCCTTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578969.1 True 378 lncRNA 0.47 3 22416176 22416851

Neighbor

gene id symbol gene type direction distance location
LOC113529714 mok coding upstream 161908 22241015 ~ 22254268 (+)
klhdc2 klhdc2 coding upstream 217285 22183763 ~ 22198891 (+)
LOC113529717 klhdc1 coding upstream 244995 22147126 ~ 22171181 (+)
ap4s1 ap4s1,LOC107590907,LOC107582370,LOC107733114,LOC107694810 coding upstream 817511 21590408 ~ 21598665 (+)
coch coch coding upstream 859745 21550393 ~ 21556431 (+)
mpp5a mpp5,LOC108443925,LOC107553288,LOC107657730,LOC107655321,LOC107752770,LOC107707694 coding downstream 607805 23024656 ~ 23052674 (+)
itsn2b LOC108269989,LOC108441044,LOC107594821,LOC107719497,LOC107590922 coding downstream 650709 23067560 ~ 23107949 (+)
esrrga esrrg,esrrga,LOC107733169,LOC107582200,LOC107590918,LOC107697723 coding downstream 1011449 23428300 ~ 23495384 (+)
ush2a ush2a coding downstream 1093350 23510201 ~ 23719967 (+)
c10h14orf28 c9h14orf28,clg15h14orf28,LOC106581668,LOC106610876 coding downstream 1352141 23768992 ~ 23777316 (+)
LOC113530233 NA non-coding upstream 4814 22411162 ~ 22411362 (+)
G170083 NA non-coding upstream 30026 22385939 ~ 22386150 (+)
LOC117598285 NA non-coding upstream 44976 22349056 ~ 22371200 (+)
G170078 dync1h1,LOC102776894 non-coding upstream 68016 22314691 ~ 22348160 (+)
G170075 dync1h1,LOC107694517,LOC107732031,LOC107660570,LOC107748244 non-coding upstream 102811 22309505 ~ 22313365 (+)
G170260 NA non-coding downstream 340389 22757240 ~ 22757444 (+)
G170261 NA non-coding downstream 342390 22759241 ~ 22759476 (+)
G170266 NA non-coding downstream 348872 22765723 ~ 22767755 (+)
G170323 NA non-coding downstream 566113 22982964 ~ 22983351 (+)
G170324 NA non-coding downstream 567096 22983947 ~ 22984361 (+)
G169692 LOC107990201 other upstream 596117 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 649803 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 741715 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 1884954 20521595 ~ 20531222 (+)
fsip1 fsip1 other upstream 1962371 20365174 ~ 20453805 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other downstream 444956 22861807 ~ 23022395 (+)
kdm1a kdm1a other downstream 2046615 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 2577642 24994493 ~ 25000619 (+)
G171329 NA other downstream 2587132 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 2759523 25176374 ~ 25177897 (+)

Expression


Co-expression Network