LOC117598314


Basic Information

Item Value
gene id LOC117598314
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19683239 ~ 19684146 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578988.1
ATGTTGTACTTGTCTATACCTGTCCATCTTCTCCAGGGTGTCGCTACATCATAAATTCAGACAGAGCAGAGAGTTTCTTCAGAGGTGGACTTGTCAAGCCAACAGTTTCAGTGCAGTTATTCCTGAGAACAATGGGAAATACAGATCAAACCTCTCAGAGCAAAGAATGCCCAGGTGAGGGCAAGGACAAAGGAAGAGGCCAAGAGCATGGACCTCGCCATGAGCCAGGTCAAGGCCAACATCACGGCAAGTGTAATGACAAGAGTCAAGAAAAAGGACAAGAAAAGGAGGGCAAAGGCAAGCCATAATGACAAGGAGACCTCTGAAGTCTGTCTGATGCTGttttttcttgtgtaaacatcaccattgaaataaaatatgtataagtAAGCtacatatatttgttttcaattaagtgataataaaaaaaaggttggtTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578988.1 True 444 lncRNA 0.41 4 19683239 19684146

Neighbor

gene id symbol gene type direction distance location
LOC113538986 LOC108269623,LOC108430634 coding downstream 39624 19629234 ~ 19643615 (-)
LOC113538672 LOC108269607 coding downstream 99989 19528667 ~ 19583250 (-)
LOC113538555 LOC108269630,LOC108441822 coding downstream 158371 19498748 ~ 19524868 (-)
grhl1 grhl1,LOC108269933 coding downstream 261314 19407717 ~ 19421925 (-)
klf11b LOC108270275 coding downstream 291057 19388971 ~ 19392182 (-)
LOC113538599 inafm2 coding upstream 88654 19772800 ~ 19775087 (-)
LOC113538902 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 156225 19840371 ~ 19867165 (-)
bub1bb bub1b coding upstream 189276 19873422 ~ 19879335 (-)
zgc:162989 ppp1r14d,LOC108269636,LOC105908342,LOC107678771,LOC107663168,LOC107552907,LOC101077163 coding upstream 207448 19891594 ~ 19908747 (-)
LOC113538610 pld4 coding upstream 335073 20019219 ~ 20025636 (-)
LOC117598328 NA non-coding downstream 2570 19679497 ~ 19680669 (-)
G168405 NA non-coding downstream 84341 19598368 ~ 19598898 (-)
G168399 NA non-coding downstream 96691 19586342 ~ 19586548 (-)
G168354 NA non-coding downstream 184551 19494063 ~ 19498688 (-)
LOC113538592 NA non-coding downstream 233511 19441089 ~ 19449728 (-)
LOC113538910 NA non-coding upstream 3085 19687231 ~ 19688109 (-)
G168466 NA non-coding upstream 79700 19763846 ~ 19765727 (-)
G168493 NA non-coding upstream 82608 19766754 ~ 19766953 (-)
G168608 NA non-coding upstream 203169 19887315 ~ 19887830 (-)
G168661 NA non-coding upstream 238959 19923105 ~ 19924187 (-)
LOC113538763 max,LOC108269635,LOC108441826,LOC103037189,LOC100701192,LOC103363129 other downstream 73461 19600130 ~ 19609778 (-)
LOC113538862 LOC108269633,LOC103039104,LOC107671782,LOC107668202 other downstream 88025 19589368 ~ 19595214 (-)
gpx2 gpx2,LOC102306767,LOC100700650 other downstream 94337 19586924 ~ 19588902 (-)
G168015 arhgap5,LOC107733129,LOC107594795,LOC107719447 other downstream 716626 18961708 ~ 18966613 (-)
LOC113538624 LOC107572756,LOC107690120,LOC107579140,LOC107722728,LOC107690130 other downstream 835543 18839615 ~ 18847696 (-)
srp14 srp14,LOC106610862 other upstream 329433 20013579 ~ 20018717 (-)
LOC113529462 LOC108269960 other upstream 614365 20298511 ~ 20301554 (-)
gchfr gchfr,LOC106583112 other upstream 638618 20322764 ~ 20330746 (-)
G169119 NA other upstream 880783 20564929 ~ 20565799 (-)
grem1b LOC108269477 other upstream 1129543 20813689 ~ 20817439 (-)

Expression


Co-expression Network