LOC117598329 (setd3,LOC107588283,LOC107668608,LOC107583493)


Basic Information

Item Value
gene id LOC117598329
gene name setd3,LOC107588283,LOC107668608,LOC107583493
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26803056 ~ 26839478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578997.1
AGTTTCTTCGCTTAATTAGCGTTTGTTTCTAATGGAGAAGCAGATATTTAGCAAAATATGGAAATAATGCTTtgttataaacataaaaatggagCCCAAAAGCGAAGAGAAAgagtaaagagaaagaaatggacagCGCAAAGCAAACAAGAGGAgataatatttttctgttttgttttgttttgttttttacacctGGTCTTTCCTTGACAACAAACTCTGTGAAAAGTTTGTGGTTGTGTGCCGCTCGGACATCACAAAGGGACGTTAAAGACTTGATGCAACAACAGCGGCCGGAAGAAAAACAGATGTACTTGACAAAACGTAAAGTTTAGatctACGTATTCTGTGGTACAAGGTCCAGTTCAGAGTTCATCATCCACAACACgactttttcttcacaataAACAGACCAACACCTTCATCAGGTTTCACTGGTGCAGGACGATGGGCAGCTTGGCGTCGGCGTTCTCCAGCAGCGCGATGTCGCTCTCCTCATACACGGGCAGAGGAGCGCCGTCATCCAGCTGCTTCTGGAAGTGCAGGCGCTTGGCACGGCCGCTGGCCTCGGCGCGCTCCAGGATCTCCTTCTCAGCCAGACGCAGCTTTATGGCCATGCGCGAGTGTGGAGAGAGGTCGGGTTTCTGCAGCATGGACCTGtcctcctgaaacacacacatcacagggCAGCCGTGTCACACTCTTACCTTCCGTCATGCAGAAGACGCGCAGGAAGGCCAGGAGCTGGGCTGAAATGGGCGGCTCACTGCAGTGCAATGCGAAAACGCTTGACCTGCAGAGATAAAAGGATCACAGTGATGTGAGCCGGTTAAccagacagccaatcagagagaggaaaagaaattcATCATCTCTTAATATAGTGGAACATAAAGAAGAGCTAAAACTCCAAAGGTATCACTGgttcctctttcttcttctttttaaacatgCTTTGGAAAATGATGCCCTAAATTGTAGCTGTTATCGTTTttatattaactttatttagcatttatggaaggagtctccagtgtcagtgcgttgtaacagtcagaggtgaagctctAGCTTTCTGTTTGGTTtgattttgag
>XR_004578998.1
AGTTTCTTCGCTTAATTAGCGTTTGTTTCTAATGGAGAAGCAGATATTTAGCAAAATATGGAAATAATGCTTtgttataaacataaaaatggagCCCAAAAGCGAAGAGAAAgagtaaagagaaagaaatggacagCGCAAAGCAAACAAGAGGAgataatatttttctgttttgttttgttttgttttttacacctGGTCTTTCCTTGACAACAAACTCTGTGAAAAGTTTGTGGTTGTGTGCCGCTCGGACATCACAAAGGGACGTTAAAGACTTGATGCAACAACAGCGGCCGGAAGAAAAACAGATGTACTTGACAAAACGTAAAGTTTAGatctACGTATTCTGTGGTACAAGGTCCAGTTCAGAGTTCATCATCCACAACACgactttttcttcacaataAACAGACCAACACCTTCATCAGGTTTCACTGGTGCAGGACGATGGGCAGCTTGGCGTCGGCGTTCTCCAGCAGCGCGATGTCGCTCTCCTCATACACGGGCAGAGGAGCGCCGTCATCCAGCTGCTTCTGGAAGTGCAGGCGCTTGGCACGGCCGCTGGCCTCGGCGCGCTCCAGGATCTCCTTCTCAGCCAGACGCAGCTTTATGGCCATGCGCGAGTGTGGAGAGAGGTCGGGTTTCTGCAGCATGGACCTGtcctcctgaaacacacacatcacagggCCGTGTCACACTCTTACCTTCCGTCATGCAGAAGACGCGCAGGAAGGCCAGGAGCTGGGCTGAAATGGGCGGCTCACTGCAGTGCAATGCGAAAACGCTTGACCTGCAGAGATAAAAGGATCACAGTGATGTGAGCCGGTTAAccagacagccaatcagagagaggaaaagaaattcATCATCTCTTAATATAGTGGAACATAAAGAAGAGCTAAAACTCCAAAGGTATCACTGgttcctctttcttcttctttttaaacatgCTTTGGAAAATGATGCCCTAAATTGTAGCTGTTATCGTTTttatattaactttatttagcatttatggaaggagtctccagtgtcagtgcgttgtaacagtcagaggtgaagctctAGCTTTCTGTTTGGTTtgattttgag

Function

symbol description
setd3 Enables histone methyltransferase activity (H3-K36 specific) and transcription coactivator activity. Involved in peptidyl-lysine methylation and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Orthologous to human SETD3 (SET domain containing 3, actin histidine methyltransferase).

GO:

id name namespace
GO:0010452 histone H3-K36 methylation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0018023 peptidyl-lysine trimethylation biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0005634 nucleus cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0046975 histone methyltransferase activity (H3-K36 specific) molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578997.1 True 1095 lncRNA 0.45 6 26803056 26839478
XR_004578998.1 False 1092 lncRNA 0.45 6 26803056 26839478

Neighbor

gene id symbol gene type direction distance location
vrk1 vrk1 coding upstream 383849 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 442965 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 454716 26334822 ~ 26348340 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 469000 26323399 ~ 26334056 (+)
LOC113534080 NA coding upstream 490549 26307077 ~ 26312507 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 64161 26903639 ~ 26914229 (+)
trnat-ugu_12 NA coding downstream 75880 26915358 ~ 26915430 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 164631 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 168456 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 887400 27726878 ~ 27760866 (+)
G172052 NA non-coding upstream 13249 26789523 ~ 26789807 (+)
LOC117598331 NA non-coding upstream 116330 26625940 ~ 26686726 (+)
G171684 NA non-coding upstream 1024324 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 1210307 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 1280367 25518116 ~ 25522689 (+)
G172099 NA non-coding downstream 27639 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 127854 26967332 ~ 26967536 (+)
G172114 NA non-coding downstream 128132 26967610 ~ 26968416 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding downstream 134218 26973696 ~ 26973942 (+)
G172352 NA non-coding downstream 493926 27333404 ~ 27333880 (+)
LOC113534148 NA other upstream 1372127 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1484779 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1625159 25176374 ~ 25177897 (+)
G171329 NA other upstream 1795290 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1802437 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 316865 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 885729 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1188522 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2021984 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2214755 29054233 ~ 29138878 (+)

Expression


Co-expression Network