LOC117598331


Basic Information

Item Value
gene id LOC117598331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26625940 ~ 26686726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579001.1
GTTCACAAAAGTGAGCGGCCATTTCAACCAGCACCACTAGAGTTTCCCTTCACACGCTttaacaagacaagaACACACAGCTTACGGAGAAACCACAGAGCATAAAcccgtctgtcctgaagatgtaaaagGAGTCTGACAGCCTCGGTCCCAGAAGAGCAGACTCGCCCTCTAAAGTACACCCCGTGCCCTCCAAATGCATCCCACAATCCCCTGCACAAAGACAGGAGGGTAAAGGGTCACTGTGTGAACAGAGGAAAAGCCCGAGGAGGAGGATTTGCTCATCATCACTCGCTCTTCTCTGATGAACGTGACTTATCTGACATTTCTCAGCACATCTAgaaatatttagcttttttctaTCGTTTTTATCTGGAACACCTCTGGTGCTGAAATCTAAAGGGGTGGAGTTCGACTTTAAAGCAAATTCACACCATTTTCCACAAAGGCTTATTTGGTGGGCCTGTCTGCCCGTGTCTTGAAGGTTCCAGGTGAGCTGGAGGTGTGGATCTGATGGTGGAGCTTTGATGTGGCACCCGTCTTGGCCTGTTCTCTCCTCGAGCCTTTTGGCTGCCGCTCTGTCTATAGCACCAGACCAGACCAGACCGGTCCAGACCAGACCAGCGTGACACGGGAGGTGCCGAGCCATTGCCGAGGCTACAATGGGAGTCTTGTTGCTCTGCCTCCCACACTGCCATTTCTCTGGTTACTGACAAGACAGCTCTGCAGTAATTTCATAGTTATTATGCTCTGGGCAATAACctgagtggaaaaaaagaaagaaagaaagcaacgGCTCAGGTATGACTCGGGTTGAAGGTTGTGTAAAAGATACCGTGATGAATGAAGTGCAATTATACACTGTTATTCTTCCTCCACGTCCCCTTGCGCACAGATCCCAGCGTCTCTCATGCGCTAATAGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579001.1 True 926 lncRNA 0.49 5 26625940 26686726

Neighbor

gene id symbol gene type direction distance location
vrk1 vrk1 coding upstream 206733 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 265849 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 277600 26334822 ~ 26348340 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 291884 26323399 ~ 26334056 (+)
LOC113534080 NA coding upstream 313433 26307077 ~ 26312507 (+)
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding downstream 216913 26903639 ~ 26914229 (+)
trnat-ugu_12 NA coding downstream 228632 26915358 ~ 26915430 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 317383 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 321208 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 1040152 27726878 ~ 27760866 (+)
G171684 NA non-coding upstream 847208 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 1033191 25587489 ~ 25592749 (+)
G171619 NA non-coding upstream 1103251 25518116 ~ 25522689 (+)
G171523 NA non-coding upstream 1236435 25389366 ~ 25389505 (+)
G171522 NA non-coding upstream 1236774 25388772 ~ 25389166 (+)
G172052 NA non-coding downstream 102797 26789523 ~ 26789807 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding downstream 116330 26803056 ~ 26839478 (+)
G172099 NA non-coding downstream 180391 26867117 ~ 26960238 (+)
G172118 NA non-coding downstream 280606 26967332 ~ 26967536 (+)
G172114 NA non-coding downstream 280884 26967610 ~ 26968416 (+)
LOC113534148 NA other upstream 1195011 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1307663 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1448043 25176374 ~ 25177897 (+)
G171329 NA other upstream 1618174 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1625321 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 469617 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 1038481 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1341274 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 2174736 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2367507 29054233 ~ 29138878 (+)

Expression


Co-expression Network