LOC117598336


Basic Information

Item Value
gene id LOC117598336
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 17925706 ~ 17926020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579004.1
TGTTTGAAGAATttaaaaagcttaatattttcaGATTTGATCAGAATTTCAATATAAAGCTACAACAGTCCAGTTGGATTATTCATTAGCATTAAATGCAAATATATCTGATGCATGAAAATCCATATTTAGTCTACTACATatagaaaaggagaagaagaagaaaaaaaaagtacgcCACTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579004.1 True 186 ncRNA 0.27 2 17925706 17926020

Neighbor

gene id symbol gene type direction distance location
mboat2a mboat2,mboat2a,LOC108269814,LOC107553282,LOC107752759 coding upstream 59050 17800201 ~ 17866656 (+)
adam17a adam17,LOC108270063 coding upstream 230961 17673961 ~ 17694745 (+)
rnf144aa rnf144a,rnf144aa,LOC107655314,LOC107752753,LOC107553279 coding upstream 252922 17633170 ~ 17672784 (+)
rsad2 rsad2 coding upstream 296943 17626258 ~ 17628763 (+)
colec11 colec11 coding upstream 734967 17187256 ~ 17190739 (+)
nhsl1a LOC108270058,LOC108425629 coding downstream 206404 18132424 ~ 18187362 (+)
apoba apob,LOC107697732 coding downstream 367799 18293819 ~ 18316382 (+)
LOC113539017 NA coding downstream 393950 18319970 ~ 18320076 (+)
tpp1 tpp1 coding downstream 462085 18388105 ~ 18396271 (+)
degs2 degs2,LOC107697737,LOC107733197 coding downstream 482070 18408090 ~ 18414404 (+)
LOC113539009 NA non-coding upstream 491485 17412038 ~ 17434221 (+)
G167123 NA non-coding upstream 563466 17362026 ~ 17362240 (+)
LOC117598255 NA non-coding upstream 764215 17155710 ~ 17161491 (+)
G166978 NA non-coding upstream 816261 17057135 ~ 17109445 (+)
G166980 NA non-coding upstream 955780 16967452 ~ 16969926 (+)
LOC113538631 NA non-coding downstream 146155 18072175 ~ 18087997 (+)
G167395 NA non-coding downstream 163584 18089604 ~ 18089814 (+)
G167428 NA non-coding downstream 200415 18126435 ~ 18127367 (+)
G167546 NA non-coding downstream 360182 18286202 ~ 18288307 (+)
G167557 NA non-coding downstream 449962 18375982 ~ 18376347 (+)
kidins220a LOC108269813,LOC108425633 other upstream 2955 17867416 ~ 17922751 (+)
itgb1bp1 itgb1bp1,LOC107707691,LOC107655317 other upstream 218874 17700467 ~ 17706832 (+)
sox11a sox11b,LOC108269454 other upstream 494955 17385507 ~ 17430751 (+)
G166976 NA other upstream 868895 17055674 ~ 17056811 (+)
asxl2 asxl2,LOC102788176,LOC107600867 other upstream 958365 16953173 ~ 16967341 (+)
ldah ldah other downstream 404447 18330467 ~ 18374080 (+)
prlh2r LOC108269650,LOC108425589 other downstream 643359 18569379 ~ 18578308 (+)
G168191 NA other downstream 1748893 19674913 ~ 19687591 (+)
LOC113538915 c9h15orf52 other downstream 1796760 19722780 ~ 19766581 (+)
zfyve19 zfyve19 other downstream 1953715 19879735 ~ 19886509 (+)

Expression


Co-expression Network