trnah-gug_13


Basic Information

Item Value
gene id trnah-gug_13
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24429404 ~ 24429475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnah-gug_13
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTGTGGCCGCAGCAACCCTGGTTCGAATCCGGGTCACGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnah-gug_13 True 72 tRNA 0.58 1 24429404 24429475

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_2 NA coding upstream 1153 24428180 ~ 24428251 (+)
trnar-acg_2 NA coding upstream 2377 24426955 ~ 24427027 (+)
trnah-gug_12 NA coding upstream 2564 24426769 ~ 24426840 (+)
cdk1 cdk1,LOC107671106,LOC107717073 coding upstream 10480 24412971 ~ 24418924 (+)
pth2 pth2 coding upstream 65524 24361819 ~ 24363880 (+)
trnar-acg_3 NA coding downstream 115 24429590 ~ 24429662 (+)
ptafr ptafr coding downstream 125108 24554583 ~ 24561278 (+)
pacrg pacrg,LOC107695182,LOC107697704,LOC107583491,LOC107590953 coding downstream 199620 24629095 ~ 24767416 (+)
qkia qkia,LOC108269894,LOC107697705,LOC107590898,LOC107721620 coding downstream 353528 24783003 ~ 24861032 (+)
rtraf c9h14orf166,cunh14orf166,zgc:56576,LOC107680004,LOC107693089,LOC107725214,LOC107583671,LOC107751811 coding downstream 618195 25047670 ~ 25055250 (+)
G171021 ect2l non-coding upstream 111338 24317534 ~ 24318066 (+)
G171019 NA non-coding upstream 119438 24309630 ~ 24309966 (+)
G171017 NA non-coding upstream 121075 24307854 ~ 24308329 (+)
G170904 NA non-coding upstream 393233 24035784 ~ 24036171 (+)
LOC117598313 NA non-coding upstream 395342 24028325 ~ 24034062 (+)
G171135 smndc1 non-coding downstream 16128 24445603 ~ 24450067 (+)
G171121 NA non-coding downstream 55853 24485328 ~ 24491209 (+)
G171215 NA non-coding downstream 330137 24759612 ~ 24800058 (+)
G171352 nid2,wu:fb77a09,LOC107564977 non-coding downstream 643271 25072746 ~ 25076475 (+)
G171413 NA non-coding downstream 705125 25134600 ~ 25134885 (+)
LOC113533992 gphna,gphn,LOC108270253,LOC108443923,LOC107752769,LOC107657705,LOC107733155 other upstream 1407009 22861807 ~ 23022395 (+)
G169692 LOC107990201 other upstream 2609345 21819281 ~ 21820059 (+)
im:7136021 LOC108270035 other upstream 2663031 21760771 ~ 21766373 (+)
G169577 heatr5a,LOC108412624 other upstream 2754943 21669907 ~ 21674461 (+)
LOC113530103 LOC108269986 other upstream 3898182 20521595 ~ 20531222 (+)
kdm1a kdm1a other downstream 33991 24463466 ~ 24482854 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other downstream 565018 24994493 ~ 25000619 (+)
G171329 NA other downstream 574508 25003983 ~ 25007766 (+)
LOC117598238 LOC108191637 other downstream 746899 25176374 ~ 25177897 (+)
samd4a samd4a other downstream 829336 25258811 ~ 25318277 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnah-gug-294 NA coding NW_023494118.1 JAAXML020000421.1 37753 ~ 37824 (+)