trnat-ugu_12


Basic Information

Item Value
gene id trnat-ugu_12
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26915358 ~ 26915430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-ugu_12
GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCGATCCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-ugu_12 True 73 tRNA 0.59 1 26915358 26915430

Neighbor

gene id symbol gene type direction distance location
hhipl1 hhipl1,LOC107668615,LOC107740569,LOC103460662 coding upstream 1129 26903639 ~ 26914229 (+)
vrk1 vrk1 coding upstream 496151 26405390 ~ 26419207 (+)
ak7b LOC108269780 coding upstream 555267 26349862 ~ 26360091 (+)
LOC113533735 amhr2 coding upstream 567018 26334822 ~ 26348340 (+)
galcb LOC108269778,LOC108444013,LOC107372531 coding upstream 581302 26323399 ~ 26334056 (+)
slirp slirp,LOC107680761,LOC107588278,LOC107583681,LOC106611374 coding downstream 88679 27004109 ~ 27006749 (+)
adck1 adck1,LOC107740534,LOC107751735,LOC107680795,LOC107676278 coding downstream 92504 27007934 ~ 27125905 (+)
tdp1 tdp1,LOC102776284 coding downstream 811448 27726878 ~ 27760866 (+)
kcnk13a kcnk13,LOC107751801,LOC107588297,LOC107680770,LOC107755770 coding downstream 852838 27768268 ~ 27773076 (+)
hmbox1a LOC108270414,LOC108437743,LOC107751802 coding downstream 866038 27781468 ~ 27793212 (+)
LOC117598329 setd3,LOC107588283,LOC107668608,LOC107583493 non-coding upstream 75880 26803056 ~ 26839478 (+)
G172052 NA non-coding upstream 125551 26789523 ~ 26789807 (+)
LOC117598331 NA non-coding upstream 228632 26625940 ~ 26686726 (+)
G171684 NA non-coding upstream 1136626 25682394 ~ 25778732 (+)
G171647 col10a1a,LOC108270375,LOC108443413,LOC102306528,LOC102208108,LOC107680775,LOC107564946,LOC101475390,LOC100691618 non-coding upstream 1322609 25587489 ~ 25592749 (+)
G172118 NA non-coding downstream 51902 26967332 ~ 26967536 (+)
G172114 NA non-coding downstream 52180 26967610 ~ 26968416 (+)
G172097 sptlc2,sptlc2b,LOC107747949,LOC107572124,LOC101069659,LOC107662183,LOC107728348,LOC107681046 non-coding downstream 58266 26973696 ~ 26973942 (+)
G172352 NA non-coding downstream 417974 27333404 ~ 27333880 (+)
LOC113533960 NA non-coding downstream 579472 27494902 ~ 27531363 (+)
LOC113534148 NA other upstream 1484429 25426891 ~ 25430929 (+)
samd4a samd4a other upstream 1597081 25258811 ~ 25318277 (+)
LOC117598238 LOC108191637 other upstream 1737461 25176374 ~ 25177897 (+)
G171329 NA other upstream 1907592 25003983 ~ 25007766 (+)
cx28.6 LOC108269818,LOC108441857,LOC101482426,LOC102791942,LOC102199391,LOC100705227,LOC102313633,LOC107679991 other upstream 1914739 24994493 ~ 25000619 (+)
nrxn3a nrxn3,LOC107583487 other downstream 240913 27156343 ~ 27467566 (+)
trnak-uuu_7 NA other downstream 809777 27725207 ~ 27725279 (+)
LOC113533782 cldn20,LOC108269830,LOC107573130,LOC107675320,LOC107571061,LOC101886267,LOC107728965,LOC108443299 other downstream 1112570 28028000 ~ 28071081 (+)
brms1la brms1l,brms1la,LOC107682295,LOC107693096 other downstream 1946032 28861462 ~ 28935700 (+)
kif28 kif28p,LOC108270380 other downstream 2138803 29054233 ~ 29138878 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_06536391_06539967 INO80C coding CI01000027 null 6536340 ~ 6540239 (-)
eurasian perch (Perca fluviatilis) trnat-ugu_2 NA coding NC_053129.1 CM020926.1 12583169 ~ 12583241 (-)
tiger barb (Puntius tetrazona) trnat-ugu_53 NA coding NC_056718.1 CM032087.1 4589736 ~ 4589808 (+)
tiger barb (Puntius tetrazona) trnag-gcc_63 NA coding NC_056703.1 CM032072.1 26109500 ~ 26109570 (-)
mexican tetra (Astyanax mexicanus) trnat-ugu_82 NA non-coding NC_035905.1 CM008308.1 37598177 ~ 37598249 (+)