Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113546937 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 22144950 ~ 22145717 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC113546937 | True | 679 | V_segment | 0.43 | 2 | 22144950 | 22145717 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598775 | NA | coding | upstream | 476068 | 21668341 ~ 21668882 (+) |
| LOC117598774 | NA | coding | upstream | 479206 | 21664594 ~ 21665744 (+) |
| LOC117598848 | NA | coding | upstream | 481410 | 21663095 ~ 21663540 (+) |
| LOC117599000 | NA | coding | upstream | 483911 | 21660425 ~ 21661039 (+) |
| LOC117598992 | NA | coding | upstream | 485843 | 21658502 ~ 21659107 (+) |
| LOC113546929 | NA | coding | downstream | 391785 | 22537502 ~ 22548866 (+) |
| cckb | LOC108274239 | coding | downstream | 469142 | 22614859 ~ 22621980 (+) |
| rnf44 | rnf44 | coding | downstream | 588018 | 22733735 ~ 22754432 (+) |
| pdlim7 | pdlim7 | coding | downstream | 635649 | 22781366 ~ 22825233 (+) |
| LOC113546949 | LOC108277208 | coding | downstream | 995997 | 23141714 ~ 23143760 (+) |
| LOC117598961 | NA | non-coding | upstream | 2434 | 22142085 ~ 22142516 (+) |
| LOC117598906 | NA | non-coding | upstream | 3695 | 22140784 ~ 22141255 (+) |
| LOC117598974 | NA | non-coding | upstream | 5617 | 22137295 ~ 22139333 (+) |
| G215095 | NA | non-coding | upstream | 11941 | 22077490 ~ 22133009 (+) |
| G215093 | NA | non-coding | upstream | 85194 | 22058344 ~ 22059756 (+) |
| LOC117598805 | NA | non-coding | downstream | 1414 | 22147131 ~ 22148445 (+) |
| LOC117598903 | NA | non-coding | downstream | 7222 | 22152939 ~ 22153426 (+) |
| LOC117598874 | NA | non-coding | downstream | 14808 | 22160525 ~ 22161315 (+) |
| LOC117598871 | NA | non-coding | downstream | 24651 | 22170368 ~ 22171945 (+) |
| LOC117598949 | NA | non-coding | downstream | 27526 | 22173243 ~ 22173780 (+) |
| LOC117598947 | NA | other | upstream | 13768 | 22126928 ~ 22131182 (+) |
| LOC117598959 | LOC108275153 | other | upstream | 24487 | 22119975 ~ 22120463 (+) |
| LOC117598804 | NA | other | upstream | 32165 | 22111931 ~ 22112785 (+) |
| LOC117598936 | NA | other | upstream | 34129 | 22110378 ~ 22110821 (+) |
| LOC117598913 | NA | other | upstream | 36846 | 22107604 ~ 22108104 (+) |
| G215027 | NA | other | downstream | 21125 | 22166842 ~ 22203806 (+) |
| G215036 | LOC108275153 | other | downstream | 30750 | 22176467 ~ 22176921 (+) |
| LOC117598950 | NA | other | downstream | 49034 | 22194751 ~ 22195274 (+) |
| LOC117598809 | NA | other | downstream | 51371 | 22197088 ~ 22197594 (+) |
| LOC117598933 | LOC108275153 | other | downstream | 53222 | 22198939 ~ 22206286 (+) |
